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TRANSCRIPT CARD

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  1. > 
  2. Transcript 'Phmamm.CG.MTP2014.S9...' > 
  3. Transcript 'KH2012:KH.L108.5.v1....' > 
  4. Transcript 'Phmamm.CG.MTP2014.S4...' > 
  5. Transcript 'Harore.CG.MTP2014.S4...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S470.g03666.01.t

Possible name(s)

SOX11; SOX12; SOX4

Gene model

Harore.CG.MTP2014.S470.g03666

Location

S470 [5,803 / 7,690]

Sequences

Amino acid sequence

Length: 477

>Harore.CG.MTP2014.S470.g03666.01.p
MLVTTIGKLHLFVTYFYELKHLPRKIAQFHGKEVTDFWQNHDLSPNEVRKTVKYSVQCTK
MLFEHTADMQTSSKSTIVGVEVELQKPQTLSKPPNSPESLGYHSDSDVSEDGVHNISHQL
KIIKTEDLHATSPSPTRDCIDPTDDESSPDEYTGRRESTSSETEKITIIKSQKNLSIQEE
LEILGPSNIQLPPPSISSQKKEAARPGHIKRPMNAFMIWSQIERRKITTADPIMHNAEIS
RNLGKRWRSLEEGNKRPYIIEAERQRLQHMRDYPDYKYKPKKRTKSTSKRNGKLDQNSDE
YETKNKKHCDENNSSIVTELSSPTTITLVTSQTSKGKRSKRAKPNKPSTMNYDEQSTVST
PALKALLASPILSSHSSHFNGAIKSEIKCDQVVYSPTSSCSSSPYNTNFVKIEPNEQQQR
PQQYYPGAQTRLPQQQTTTVTSSYHQMIQQQKTQQMVEEFNAVYEMFDRGNALKVRI

Nucleotide sequence

Length: 1,434

>Harore.CG.MTP2014.S470.g03666.01.t
ATGTTGGTTACAACTATCGGTAAACTACATCTTTTTGTTACCTACTTCTACGAGTTGAAA
CACTTACCGAGAAAAATTGCTCAATTTCACGGGAAAGAAGTGACGGATTTTTGGCAGAAT
CACGATTTATCTCCGAACGAGGTGAGGAAAACTGTGAAGTATTCTGTGCAATGTACCAAG
ATGCTTTTCGAGCATACCGCCGATATGCAAACTTCGAGCAAATCAACGATAGTTGGCGTC
GAAGTTGAGCTTCAAAAGCCGCAGACATTGTCAAAACCACCGAACTCGCCTGAGTCTCTT
GGTTATCACAGCGATTCAGATGTTTCCGAGGATGGTGTCCATAATATATCTCATCAGTTG
AAGATCATAAAGACAGAGGATCTTCATGCAACTTCACCATCACCAACAAGAGATTGCATA
GATCCAACAGATGATGAATCATCACCAGATGAATATACTGGGAGAAGAGAATCCACATCT
TCCGAGACCGAGAAGATCACGATAATAAAATCGCAGAAGAATCTTAGCATCCAGGAAGAG
CTTGAGATTTTGGGACCATCCAACATCCAGCTTCCTCCACCCTCGATCAGCAGTCAGAAA
AAGGAAGCTGCTAGACCTGGTCATATCAAACGTCCAATGAATGCGTTCATGATTTGGTCT
CAGATCGAAAGAAGGAAGATTACAACAGCAGATCCCATTATGCATAACGCCGAGATAAGT
AGGAATCTTGGAAAGAGGTGGAGGAGTTTGGAGGAGGGAAACAAGAGGCCTTACATCATT
GAGGCAGAGAGACAGCGTCTGCAACACATGCGAGATTATCCAGATTATAAATATAAACCA
AAGAAGAGGACTAAAAGTACTTCGAAACGCAACGGCAAGCTGGATCAAAATTCTGACGAA
TATGAGACAAAGAACAAAAAGCACTGTGACGAAAACAATAGTAGCATTGTGACGGAATTG
TCGTCGCCGACGACCATCACCCTCGTTACGTCACAGACGTCGAAAGGTAAAAGGTCAAAG
CGAGCCAAACCGAACAAACCCTCCACCATGAACTATGACGAACAATCTACGGTTTCGACC
CCCGCTTTGAAAGCTTTGCTCGCGTCTCCCATTCTATCCTCTCACTCCTCCCACTTTAAC
GGTGCTATCAAGTCGGAAATCAAGTGCGATCAGGTTGTGTACTCGCCAACTTCCTCCTGC
TCCTCTTCCCCCTATAATACGAACTTCGTCAAAATCGAACCAAACGAGCAACAACAGCGA
CCGCAACAATACTATCCAGGAGCTCAAACAAGGTTACCACAGCAACAGACGACGACGGTG
ACGTCATCATATCACCAAATGATCCAACAACAGAAAACTCAACAGATGGTGGAAGAATTC
AATGCAGTGTATGAGATGTTTGACAGAGGGAATGCATTGAAGGTACGAATATGA

InterProScan

SUPERFAMILY
HMG_box_dom_sf (IPR036910) - T[192-278] 6.28E-24
Gene3D
HMG_box_dom_sf (IPR036910) - T[207-284] 3.3E-26
SMART
HMG_box_dom (IPR009071) - T[208-278] 6.4E-23
ProSiteProfiles
HMG_box_dom (IPR009071) - T[209-277] 21.081
Pfam
HMG_box_dom (IPR009071) - T[209-277] 1.0E-22

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SOX11_HUMAN 68.354 % 127 4.56E-32
SOX4_HUMAN 70 % 129 7.51E-33
SOX12_HUMAN 64.198 % 120 1.62E-30