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TRANSCRIPT CARD

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  1. Transcript 'Harore.CG.MTP2014.S4...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S46.g01235.02.t

Possible name(s)

ATG10; ATG3

Gene model

Harore.CG.MTP2014.S46.g01235

Location

S46 [94,340 / 97,201]

Sequences

Amino acid sequence

Length: 311

>Harore.CG.MTP2014.S46.g01235.02.p
MQNVFNSVKSSALGVAEMLTPVLKASKFKDTGVLTPDEFVVAGDFLVHHCPTWQWASGDR
SKTKSYLPPEKQYLITRNVSCHKRCKEIEYNNENEALIDEQDGDGGWVDTHHNYTSEVGK
MQDEVKEMTMSEKKDSKHDDDEDSDDDNDEALDMEDFAEKLEADDDARVDIVAVKEPTNG
AASGEPTEEGILQTRTYDLHITYDKYYQTPRLWLSGYDEDRKPLTMKQMYEDISQDHVNK
TVTIEPHPHLPPPNMCSVHPCRHAEVMKKIMQTVESGGGQLEVQMYLLVFLKIVQAVIPT
IEYDYTRHFTL

Nucleotide sequence

Length: 1,410

>Harore.CG.MTP2014.S46.g01235.02.t
AGGCAATAAGGTTCCCTGTTTAATTGCATGTAATAATTCACACAGTAAGTTTCTTATTCA
GTTAAATTGTAAATAGAAAACAGAGTAGAGAGCAAACTTTAAAATGCAAAACGTATTTAA
TTCGGTTAAAAGCAGTGCGTTAGGCGTTGCAGAGATGCTAACACCCGTTCTCAAGGCTTC
AAAGTTCAAAGATACCGGAGTTTTGACACCAGATGAATTTGTTGTTGCTGGAGATTTTTT
AGTTCATCACTGCCCAACGTGGCAATGGGCATCCGGAGACAGATCAAAGACGAAATCGTA
TTTGCCTCCTGAAAAGCAGTATTTAATTACCCGAAATGTATCATGCCACAAAAGATGCAA
GGAAATAGAATACAATAATGAAAACGAAGCTCTCATTGATGAACAGGATGGAGATGGTGG
TTGGGTGGATACACATCACAATTATACTAGCGAGGTCGGAAAGATGCAAGATGAAGTGAA
AGAGATGACAATGTCAGAAAAAAAAGATTCGAAGCATGATGACGATGAAGACTCGGATGA
TGACAATGATGAAGCTCTGGACATGGAGGACTTTGCAGAAAAACTAGAGGCTGATGATGA
TGCTCGTGTCGATATCGTTGCTGTCAAAGAACCTACTAATGGAGCAGCAAGTGGAGAACC
AACGGAAGAAGGGATTTTACAGACTCGTACCTATGATTTACACATCACATATGATAAATA
CTATCAAACTCCTAGATTATGGTTGTCAGGTTACGATGAGGACCGTAAACCTCTCACAAT
GAAACAGATGTATGAGGACATCAGCCAAGATCACGTCAATAAAACAGTTACCATAGAACC
ACACCCACATTTACCCCCTCCAAACATGTGTTCGGTGCATCCATGCAGGCATGCCGAGGT
AATGAAGAAAATCATGCAAACTGTGGAGAGTGGCGGAGGTCAATTGGAAGTTCAGATGTA
TCTCCTTGTTTTCCTCAAAATAGTCCAAGCAGTCATACCTACGATTGAATACGACTACAC
AAGGCATTTTACATTGTAATAGTAATGAGTTGGATCAAACATTTATATGCAAAAGAAATG
AGCATGCTGAGATAATTATTATAAGAACCCACTTCATATATGAAGACATCTTGTATAGAT
CCTAAATCAGATGTACGGATGGATGATGCATTGTAGCTTTTCATTTTTTTCCTGATTGTT
ATGTAAATAGTGAAATTATATTACTACTGTAATAAATGAATATTCTGCCATCATAAAAAT
TGTCAAGTAGTCCTACATGACAGCATAAAGTAAGTGCTTTGGTCGCAAAAAGTTCTGGTG
AGGCAATCACTCTATCACTAGCAGTGAAGCAATAACTCTATCACTTACTAACCGAAATCA
AGAGTCCTGGGCCTCCTAAAAAGGTTGAGG

InterProScan

Pfam
Autophagy-rel_prot_3_N (IPR007134) - T[8-146] 7.4E-51
Pfam
Autophagy-rel_prot_3 (IPR007135) - T[201-262] 5.3E-20
Pfam
Autophagy-rel_prot_3_C (IPR019461) - T[283-306] 2.9E-12

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
ATG3_HUMAN 63.551 % 400 5.71E-141