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TRANSCRIPT CARD

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  1. Transcript 'Harore.CG.MTP2014.S4...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S461.g12970.02.t

Possible name(s)

TBX2; TBX4; TBX6

Gene model

Harore.CG.MTP2014.S461.g12970

Location

S461 [47,117 / 48,268]

Sequences

Amino acid sequence

Length: 219

>Harore.CG.MTP2014.S461.g12970.02.p
MLDPSQKESSNNTFLSLLVSLIAIKRIQRVDSNRITKQFTEYPKDSFRRKTAMSAFPISD
IGGSWEYSHAPPTATSATGIPGFPEQSVGGLQLPFPGYTYVGASPLTQPRRHFPNSTPVL
GNYAGLSSDREGIATSLNPYISKFSANAQWPISDIHQSKKSVYIPEERDVSNQFQTDKQQ
QQQFMKLPDPQMQVQLCDKELWDQFSRAGTEMIVTKTGR

Nucleotide sequence

Length: 660

>Harore.CG.MTP2014.S461.g12970.02.t
ATGCTTGACCCAAGCCAAAAAGAAAGTAGCAACAATACATTTCTATCCTTGTTAGTAAGT
CTCATTGCCATTAAAAGAATACAGCGAGTTGACAGCAACAGAATCACGAAACAATTTACG
GAGTATCCCAAAGATAGTTTTCGCCGTAAGACAGCTATGTCAGCTTTTCCTATCTCCGAT
ATCGGAGGGAGCTGGGAATATTCGCATGCACCTCCGACCGCAACATCAGCCACAGGAATA
CCAGGTTTTCCAGAACAAAGTGTGGGAGGACTTCAATTACCCTTTCCTGGATATACATAC
GTAGGAGCTTCTCCTTTAACCCAGCCTCGGCGCCACTTCCCTAATTCGACACCGGTTCTA
GGAAATTATGCGGGACTATCAAGTGACAGGGAAGGCATTGCGACCAGTTTGAATCCATAC
ATTTCTAAATTTTCAGCAAATGCTCAATGGCCAATATCAGATATCCACCAGTCGAAAAAA
TCAGTTTACATTCCCGAAGAGAGAGACGTCAGCAATCAGTTTCAAACGGATAAACAGCAG
CAACAGCAATTTATGAAGTTGCCTGACCCGCAAATGCAGGTTCAGCTTTGCGACAAAGAA
CTGTGGGACCAGTTTTCTCGAGCTGGAACCGAGATGATTGTAACAAAGACAGGAAGGTAA

InterProScan

Gene3D
T-box_sf (IPR036960) - T[155-219] 2.6E-7
SUPERFAMILY
p53-like_TF_DNA-bd (IPR008967) - T[192-219] 3.48E-6
Pfam
TF_T-box (IPR001699) - T[194-219] 6.7E-7
ProSiteProfiles
TF_T-box (IPR001699) - T[196-219] 11.13

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value