- Transcript 'KH2012:KH.C4.587.v1....' >
- Transcript 'Haaura.CG.MTP2014.S2...' >
- Molecular Tool 'citb15l4-MO (Hamada's MO)' >
- Molecular Tool 'ciad34e09-MO (Hamada's MO)' >
- Transcript 'Harore.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S45.g04355.01.t
Possible name(s)
GATA3; GATA4; GATA6
Gene model
Location
S45 [364,790 / 379,269]
Amino acid sequence
Length: 972
>Harore.CG.MTP2014.S45.g04355.01.p
MQPPTGVLPFTAHPYSSHQPYVHVYHPERVQAEISESNYSTVQTNTGDAAGSGTPTGSCE
NLSDRTASPQTHKDFITSSEQSMPMSANTMQPPTGVLPFTAHPYSSHQPYVHVYHPERVQ
AEISESNYSTVQTNTGDAAGSGTPTGSCENLSDRTASPQTHKDFITSSEQSMPMSANTMQ
PPTGVLPFTAHPYSSHQPYVHVYHPERVQAEISESNYSTVQTNTGDAAGSGTPTGSCENL
SDRTASPQTHKDFITSRMSNTDLPRQMTEHAGNSPSAHDKAQWDQRTYVTANSDGALHDR
YTEMASKYSPKSVSCLQSFTSPRKCAGSPIGDSGVEEDRGSSVNSSANTINRSRTSLGGS
STGSAPSDQTSNFDVGSLRGGGVPSSRSYISSNFSSIESVSSAPTETHLQNIGPPALSYA
QEYMTESSDDNRRILSYPSSMAHAVNYQRESGYGNPLYPGYQIPPNGSASGAHLNPFSHT
LSYPATQTAGIITEIPESQETISSLSHNPYPSCVGPSPELWSGQAGSGYDAMAYPAGMAA
AMRMQMTGSNLPTQYGYQDNRECVNCGSVATPLWRRDGTGHYLCNACGLYRGGGQVRPTP
LKNKGKLTSCRRQVCTNCRTTVTTLWRRSPDGSPVCNACGLYQKLHGVARPPTMKKDSIQ
TRKRKPKGQGKGKKQANGKRELSAVDSPVHNGFQQPSLQTNTKETSPISSSSASSLSLHN
ASGSSSASSAINYYHHGNSMAGDAVNLSLQYQHNTSIQSQRSLSSGEGLGNNSVLASSGL
DQTLGGRSSCSPPAEDDHTTSNLGTSPSGAISNVSTHSSNGLRCSPDSDRYSPSHATAGH
LAMYSNNVGLPRMAYPNGYALQASTIPLINSTDASSNYQSYSLTIPGRQQSDGTAMPSSS
ANFHSAASFIDQPMIDPSGYRGLVATTGYHDSGPLYPASNSACGPTRLYRNTQHHHHPYS
RPTYVKNESGLA
Nucleotide sequence
Length: 4,526
>Harore.CG.MTP2014.S45.g04355.01.t
ATGCAGCCCCCGACCGGTGTCCTTCCTTTTACCGCTCACCCATATTCTTCTCATCAGCCG
TATGTACACGTTTACCACCCTGAAAGAGTGCAGGCGGAGATCTCGGAATCTAACTATTCA
ACAGTGCAGACAAATACGGGTGACGCAGCTGGTTCTGGTACTCCTACCGGAAGCTGTGAA
AATTTGAGTGATCGAACAGCTAGTCCACAAACTCATAAAGACTTCATTACGAGCAGCGAG
CAATCGATGCCCATGTCAGCCAACACGATGCAGCCCCCGACCGGTGTCCTTCCTTTTACC
GCTCACCCATATTCTTCTCATCAGCCGTATGTACACGTTTACCACCCTGAAAGAGTGCAG
GCGGAGATCTCGGAATCTAACTATTCAACAGTGCAGACAAATACGGGTGACGCAGCTGGT
TCTGGTACTCCTACCGGGAGCTGTGAAAATTTGAGTGATCGAACAGCTAGTCCACAAACT
CATAAAGACTTCATTACGAGCAGCGAGCAATCGATGCCCATGTCAGCCAACACGATGCAG
CCCCCGACCGGTGTCCTTCCTTTTACCGCTCACCCATATTCTTCTCATCAGCCGTATGTA
CACGTTTACCACCCTGAAAGAGTGCAGGCGGAGATCTCGGAATCTAACTATTCAACAGTG
CAGACAAATACGGGTGACGCAGCTGGTTCTGGTACTCCTACCGGGAGCTGTGAAAATTTG
AGTGATCGAACAGCTAGTCCACAAACTCATAAAGACTTCATTACGAGCAGAATGAGTAAC
ACTGATCTCCCACGTCAAATGACTGAACACGCGGGAAATTCGCCGTCAGCGCACGACAAA
GCTCAATGGGATCAACGGACATACGTGACGGCCAACTCGGATGGTGCTTTACACGATCGA
TACACCGAAATGGCCAGTAAATATTCTCCAAAGTCAGTTTCATGCCTCCAGTCTTTTACC
AGTCCAAGAAAATGTGCTGGGAGTCCCATAGGTGATTCTGGTGTCGAGGAAGATAGAGGC
TCCAGCGTTAATAGCAGTGCAAATACTATCAATAGGAGTAGAACGAGCTTGGGTGGTAGC
AGTACTGGTAGCGCTCCCAGCGACCAGACTTCCAATTTTGATGTTGGATCTTTGAGAGGT
GGTGGTGTCCCGTCATCTCGTAGTTACATTTCGTCTAACTTTTCATCAATTGAATCAGTG
TCATCTGCTCCGACAGAAACGCATTTGCAGAATATCGGTCCACCAGCACTAAGCTATGCT
CAAGAATACATGACAGAATCTAGTGATGACAATAGACGTATATTGTCGTACCCGTCTAGC
ATGGCCCATGCCGTCAACTACCAACGAGAATCGGGTTACGGGAACCCTCTTTATCCCGGT
TACCAGATTCCTCCGAACGGAAGTGCGTCGGGAGCTCACCTCAATCCATTTTCTCACACA
TTGTCTTATCCGGCCACGCAAACAGCCGGAATAATAACGGAAATTCCCGAGTCTCAAGAA
ACCATTTCGTCGTTGAGCCACAATCCCTATCCCTCTTGCGTCGGACCTTCTCCCGAACTG
TGGTCCGGTCAGGCAGGCTCTGGCTACGATGCCATGGCGTATCCAGCCGGTATGGCAGCT
GCCATGCGAATGCAAATGACAGGTTCAAATCTGCCGACGCAATACGGTTATCAAGATAAT
CGTGAATGCGTTAATTGCGGATCAGTAGCAACTCCATTGTGGCGACGAGACGGTACCGGA
CATTACCTATGCAACGCATGTGGACTTTACCGGGGTGGAGGACAAGTTAGACCTACGCCC
TTGAAGAATAAAGGGAAACTGACCTCTTGTAGACGTCAGGTATGCACGAACTGCCGAACA
ACCGTAACCACACTTTGGCGCCGGAGTCCGGACGGGAGTCCTGTCTGCAATGCATGCGGC
TTGTATCAGAAATTGCATGGAGTTGCAAGACCCCCTACTATGAAGAAAGACAGCATTCAG
ACAAGAAAAAGAAAGCCCAAAGGTCAAGGCAAAGGCAAGAAACAAGCAAACGGAAAGCGA
GAACTTTCCGCCGTCGATTCGCCAGTGCACAACGGATTCCAGCAGCCATCGTTGCAAACA
AATACGAAAGAAACATCACCTATTTCGTCATCGTCTGCCTCGTCGTTATCCCTGCATAAC
GCGAGCGGTAGCAGTAGCGCCTCTAGCGCCATCAACTACTATCACCACGGCAACAGCATG
GCAGGTGATGCTGTGAACCTGAGCTTACAGTACCAGCATAACACAAGCATTCAGAGTCAA
CGTAGCTTGTCCAGCGGGGAAGGACTTGGAAATAATTCGGTACTTGCTTCATCGGGCCTC
GATCAAACCCTTGGCGGGAGATCGAGCTGTTCTCCTCCGGCGGAAGACGATCACACCACC
TCTAATTTGGGGACTTCGCCTTCGGGGGCCATAAGTAACGTGTCGACTCATTCTTCCAAT
GGCCTTAGATGTTCACCAGATTCAGATCGATACAGTCCTTCCCATGCCACTGCAGGACAT
CTAGCAATGTATTCCAATAATGTAGGATTACCTCGGATGGCCTACCCAAACGGATACGCT
TTGCAAGCCAGTACGATCCCACTAATAAATTCGACCGATGCTTCGAGCAATTACCAAAGT
TATTCGCTAACTATTCCCGGTCGTCAACAGAGTGATGGTACGGCGATGCCCTCATCCAGC
GCCAATTTTCATTCGGCAGCCAGCTTTATAGACCAACCTATGATAGATCCATCGGGTTAT
AGAGGACTCGTAGCTACCACGGGATATCACGATAGTGGGCCCCTTTACCCGGCGTCCAAT
TCTGCTTGCGGGCCCACGCGCCTTTATCGCAATACACAACACCATCATCATCCGTACTCA
AGACCTACTTACGTGAAAAACGAATCGGGTTTAGCATGATGGCGGATGGAAAAAGATGGA
TTAGTGGATGTTACCATGTGGTTGAATGATCACTGATGGTAATCGACGGTGTCTCTGACT
TATGCTAGGTCTTTTATTCAAATTGCTATCATGCATAAAGAGTAAATCGTCAAGGGTATT
GTGATGGTTCACATTATAAGTGATGTGAGAGTGATATTAAACATAATATATAATGTATAC
CTGGCTGAGCGTTTGTACTGAATTAGCTGACAGTATTTCAACTGCCGCTTAAGGATTGCA
TCCGTAAATTCATGAAGGCAGCTTGATGGTCCTAACAAAATGACTTATGAATTAGTCGGA
CCGTGATGGTTGTAGAAGACGTCAAGTTTATTTCGAACTTTCGTTATTTTCTTGAATCCT
ATCTTGAATCCTTTTTGAATCCTTTCACGAATGTGCTTTTAAATTTGCCGTTTACCTTCA
CGTTATCGTTACTAAATGTTCCATACCCTTTTTATATATTATTACTACTATCACATACTT
TTTATATACGTTTGTCATTTCGTTTACTGAAAACATACAAGTTTAATACTATTTCTTTCT
AGCTTAAATAGTATCCTTTCGGAGATTCTAATTGCGACGCATTCTGTTCGAAATCTTTTC
CCCTGTGATGAGACTGTTCGATACGTAATTTTTATCAGTGAAGAATAAATTCACATTCGT
TGAATGTGTTACTTTTCTCGCCTGTAAATAGTATTTTTCGTACAATTAATTCTTTGTGTG
TTGGTTATATGCTTTCGGTTAGAAAATAAACAAATAAGACAATTTTATTAGAGTTGTGGC
AAATCTATATTTCCTGGTTTTATTCAAGTTCTAGGGAATGTATTTAATAATTCTGAACTA
AAATTCTGCGTGCTGGTCGTTTTCATACAATGCACTGCGTATCATTAAGAAAATCGATTC
AATTGGCTTTCAAATTCACTTTCCACTGCAATACTTGCAAAAATATTTGACACAACAATT
ACATGTACTGATATATACAGTGTTGCAAATTTTGTACCTTTCACGGTCACAGATGATGGA
TTAACCTGGATAACAACAACTGCTGTATACTATGAACACATTTTAAATTAATGTTAGATC
AATACCAACAATCAACATAACGTATTCTGTAGGCTGTTTTAACTAGTACTCCATATCCAG
CAAAACGTAAATCATAAATTTCGGTTATACGCAAAATAATGTAACTCGCGTTTTAACGGG
TTAAACCTCGTATGATTTTTTCCTGCTTATTATTTTAAATTAGGCTAATAAGGAATAATT
AAATCCATACTTTAATATTGCAGTCCGTTTATTTTATTCGAATCCTAACTTGAAAATTGC
CACTGCCTTCCTCAATGAATAGGTTTGTCCTTTTCGTTCGAAAATTGTCTTTCGCTACAT
ATGCATTGTATGAAATCGCGAGAGCAGCAACCATAGCCGAGGACCTTTGACATCATCTTT
GTAATAGCAACCGTACCTTGAATTTCGTTATTCTTTTTTTGCATCGCTGTTGTTTCGTAT
TTTGTTTTCATGTATATATCGTATTTAAAATAACAACAGTAAAAATAGTAGATTATTTAT
TGATTGTATGAAGGAATAGAGATTCG
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[556-605] 1.6E-17 - T[610-675] 7.0E-26 |
| SMART |
Znf_GATA (IPR000679) - T[557-606] 9.8E-12 - T[609-659] 3.3E-21 |
| ProSiteProfiles |
Znf_GATA (IPR000679) - T[557-611] 20.983 - T[615-662] 25.928 |
| PRINTS |
Znf_GATA (IPR000679) - T[559-576] 1.6E-10 - T[577-594] 1.6E-10 |
| ProSitePatterns |
Znf_GATA (IPR000679) - T[563-587] . - T[615-639] . |
| Pfam |
Znf_GATA (IPR000679) - T[563-590] 9.0E-11 - T[615-648] 1.2E-14 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| GATA6_HUMAN | 65.254 % | 163 | 3.75E-42 |
| GATA4_HUMAN | 60 % | 164 | 1.1E-43 |
| GATA3_HUMAN | 50 % | 156 | 7.61E-41 |