- Transcript 'Harore.CG.MTP2014.S2...' >
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Transcript Model
Transcript Id
Harore.CG.MTP2014.S42.g07916.02.t
Possible name(s)
TBR1; TBX19; TBXT
Gene model
Location
S42 [246,314 / 248,277]
Amino acid sequence
Length: 223
>Harore.CG.MTP2014.S42.g07916.02.p
MFYVYFRSLSQSQNKHKYIVQGIMSITNNMESPSDSEVRLTLNDRALWTKFCSLTNEMIV
TKSGRRMFPVLKLTASGLEPNSMYSFLLDFAPADSNRWKYVNGEWVPGGKPEPHAASCVY
VHPDSPNFGSHWMKQPVSFNKVKLTNKGNGGGQQIMLNSLHKYEPRIHVVKVGGEAASQR
TIATFSFPESQFIAVTAYQNEEVTSLKIKHNPFAKAFLDAKER
Nucleotide sequence
Length: 672
>Harore.CG.MTP2014.S42.g07916.02.t
ATGTTCTACGTCTACTTTAGATCGTTATCGCAATCGCAAAATAAACATAAATACATTGTA
CAAGGAATTATGTCAATTACAAATAATATGGAGTCGCCATCTGACAGCGAAGTGAGATTG
ACTCTGAATGATCGTGCTCTATGGACAAAGTTCTGTTCTCTAACAAACGAAATGATTGTA
ACAAAAAGCGGAAGACGGATGTTCCCTGTCCTAAAATTGACAGCATCCGGACTCGAACCA
AATTCAATGTATTCTTTTCTCCTTGACTTCGCACCAGCCGATTCAAACAGATGGAAGTAC
GTGAACGGAGAATGGGTTCCTGGAGGTAAACCTGAACCACATGCAGCGTCATGCGTTTAC
GTTCATCCAGATTCGCCAAATTTCGGATCACACTGGATGAAACAACCAGTCAGCTTTAAT
AAAGTTAAACTGACAAACAAAGGGAATGGAGGTGGACAACAAATTATGTTAAATTCACTT
CATAAATACGAACCTCGCATCCATGTGGTAAAAGTTGGAGGGGAAGCGGCATCGCAGCGT
ACAATCGCAACCTTTTCTTTCCCGGAATCACAGTTCATTGCTGTCACAGCTTATCAGAAC
GAAGAGGTTACATCTCTGAAGATTAAACATAACCCTTTTGCTAAGGCATTTTTGGACGCA
AAGGAGCGGTGA
| PANTHER |
TF_T-box (IPR001699) - T[27-223] 4.6E-126 |
| Gene3D |
T-box_sf (IPR036960) - T[37-223] 1.9E-80 |
| SMART |
TF_T-box (IPR001699) - T[37-223] 6.5E-107 |
| SUPERFAMILY |
p53-like_TF_DNA-bd (IPR008967) - T[38-219] 1.74E-74 |
| CDD |
TF_T-box (IPR001699) - T[38-223] 1.21223E-110 |
| Pfam |
TF_T-box (IPR001699) - T[41-219] 3.2E-73 |
| ProSiteProfiles |
TF_T-box (IPR001699) - T[42-219] 73.335 |
| ProSitePatterns |
TF_T-box_CS (IPR018186) - T[47-66] . - T[121-139] . |
| PRINTS |
TF_T-box (IPR001699) - T[55-79] 1.1E-44 - T[120-133] 1.1E-44 - T[137-146] 1.1E-44 - T[156-170] 1.1E-44 - T[190-203] 1.1E-44 - T[211-219] 1.1E-44 |
| PRINTS |
TF_Brachyury (IPR002070) - T[100-120] 3.3E-22 - T[161-178] 3.3E-22 - T[215-223] 3.3E-22 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| BRAC_HUMAN | 75.393 % | 310 | 3.24E-105 |
| TBX19_HUMAN | 65.366 % | 295 | 3.59E-99 |
| TBX6_HUMAN | 50.549 % | 198 | 1.25E-61 |