- Transcript 'Harore.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S42.g07916.01.t
Possible name(s)
TBR1; TBX19; TBXT
Gene model
Location
S42 [246,314 / 250,245]
Amino acid sequence
Length: 555
>Harore.CG.MTP2014.S42.g07916.01.p
MFYVYFRSLSQSQNKHKYIVQGIMSITNNMESPSDSEVRLTLNDRALWTKFCSLTNEMIV
TKSGRRMFPVLKLTASGLEPNSMYSFLLDFAPADSNRWKYVNGEWVPGGKPEPHAASCVY
VHPDSPNFGSHWMKQPVSFNKVKLTNKGNGGGQQIMLNSLHKYEPRIHVVKVGGEAASQR
TIATFSFPESQFIAVTAYQNEEVTSLKIKHNPFAKAFLDAKERPDQTDFHSLAGIPVSSP
QVPSWYGRNGSTSSARHFTHCNSYGGESELTSVQDTAIPSYTSRNCMRNSYRGNARATPY
TIPHKELTCQATSFPEPVPNDGFYPMFPNSELLPRTTLNNYSPAMGAYTNSSIVTSSDIQ
SGNNNNFFYSNNNNINTTDEVPTTYMTNDFNSFYNQSSNSGMPGTTYLPYQSSPVNQFYS
YQPPYSTEIADISPTQQDIINAQNPYQTAWTPPLSYDGCSTMYNSITPYSSSGESTTSEM
TLLATARNSTTTESHTTEIEQYIPSSSDLEVVPYDTPNLEVYSTNAMIPYTSISDITSDN
LLQTHISSFSSPSLE
Nucleotide sequence
Length: 1,668
>Harore.CG.MTP2014.S42.g07916.01.t
ATGTTCTACGTCTACTTTAGATCGTTATCGCAATCGCAAAATAAACATAAATACATTGTA
CAAGGAATTATGTCAATTACAAATAATATGGAGTCGCCATCTGACAGCGAAGTGAGATTG
ACTCTGAATGATCGTGCTCTATGGACAAAGTTCTGTTCTCTAACAAACGAAATGATTGTA
ACAAAAAGCGGAAGACGGATGTTCCCTGTCCTAAAATTGACAGCATCCGGACTCGAACCA
AATTCAATGTATTCTTTTCTCCTTGACTTCGCACCAGCCGATTCAAACAGATGGAAGTAC
GTGAACGGAGAATGGGTTCCTGGAGGTAAACCTGAACCACATGCAGCGTCATGCGTTTAC
GTTCATCCAGATTCGCCAAATTTCGGATCACACTGGATGAAACAACCAGTCAGCTTTAAT
AAAGTTAAACTGACAAACAAAGGGAATGGAGGTGGACAACAAATTATGTTAAATTCACTT
CATAAATACGAACCTCGCATCCATGTGGTAAAAGTTGGAGGGGAAGCGGCATCGCAGCGT
ACAATCGCAACCTTTTCTTTCCCGGAATCACAGTTCATTGCTGTCACAGCTTATCAGAAC
GAAGAGGTTACATCTCTGAAGATTAAACATAACCCTTTTGCTAAGGCATTTTTGGACGCA
AAGGAGCGTCCTGATCAAACTGATTTCCACTCATTAGCCGGGATCCCAGTTTCTAGTCCT
CAAGTTCCCTCCTGGTACGGGCGGAACGGATCCACAAGTTCAGCGCGCCATTTTACTCAT
TGTAATTCTTACGGTGGTGAATCCGAATTAACTTCAGTGCAAGATACAGCGATTCCCTCC
TATACCTCAAGGAACTGCATGCGGAACTCATACCGGGGTAACGCGCGAGCAACTCCATAC
ACTATTCCCCATAAAGAGCTCACTTGCCAAGCCACAAGTTTCCCAGAGCCAGTTCCTAAC
GACGGATTCTACCCTATGTTTCCTAATTCCGAGCTCCTACCCCGCACAACACTGAACAAC
TATTCTCCTGCAATGGGTGCATACACGAACAGTTCAATAGTAACTTCGAGCGATATCCAA
AGTGGAAATAATAACAATTTCTTCTATTCGAACAACAACAACATAAATACGACAGATGAA
GTTCCAACCACCTATATGACGAACGACTTCAATTCGTTCTATAATCAATCGTCCAACAGC
GGCATGCCAGGGACAACATATCTGCCCTACCAAAGTTCGCCAGTAAACCAGTTTTATTCT
TATCAGCCTCCTTATTCTACGGAAATAGCAGACATTTCCCCAACGCAACAAGATATTATC
AATGCGCAAAACCCATATCAAACCGCATGGACCCCGCCACTTAGCTACGACGGTTGTTCA
ACGATGTACAATTCCATTACACCCTATTCGAGTTCTGGAGAGAGTACCACAAGCGAAATG
ACACTGCTTGCCACAGCAAGAAATTCCACCACAACAGAATCACATACCACCGAAATAGAG
CAATATATACCAAGTTCTTCAGATCTCGAAGTTGTGCCATACGACACTCCGAATTTAGAA
GTTTACAGTACAAATGCAATGATTCCATATACCTCTATTTCCGACATTACTTCAGATAAT
CTTTTACAGACACACATATCTTCATTCTCATCACCCTCTCTCGAATAA
| PANTHER |
TF_T-box (IPR001699) - T[27-510] 3.2E-129 |
| SMART |
TF_T-box (IPR001699) - T[37-224] 1.7E-109 |
| Gene3D |
T-box_sf (IPR036960) - T[37-224] 1.8E-79 |
| CDD |
TF_T-box (IPR001699) - T[38-223] 4.74628E-107 |
| SUPERFAMILY |
p53-like_TF_DNA-bd (IPR008967) - T[38-219] 1.86E-73 |
| Pfam |
TF_T-box (IPR001699) - T[41-219] 3.4E-72 |
| ProSiteProfiles |
TF_T-box (IPR001699) - T[42-219] 73.335 |
| ProSitePatterns |
TF_T-box_CS (IPR018186) - T[47-66] . - T[121-139] . |
| PRINTS |
TF_T-box (IPR001699) - T[55-79] 1.1E-42 - T[120-133] 1.1E-42 - T[137-146] 1.1E-42 - T[156-170] 1.1E-42 - T[190-203] 1.1E-42 - T[211-219] 1.1E-42 |
| PRINTS |
TF_Brachyury (IPR002070) - T[100-120] 8.1E-22 - T[161-178] 8.1E-22 - T[215-225] 8.1E-22 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| BRAC_HUMAN | 67.727 % | 318 | 1.08E-103 |
| TBX19_HUMAN | 65.366 % | 300 | 2.01E-96 |
| TBR1_HUMAN | 53.403 % | 207 | 6.84E-59 |