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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C12.568.v2...'
  2. Transcript 'Harore.CG.MTP2014.S4...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S425.g13702.01.t

Possible name(s)

TPM1; TPM2; TPM4

Location

S425 [14,318 / 17,211]

Sequences

Amino acid sequence

Length: 353

>Harore.CG.MTP2014.S425.g13702.01.p
MAEDNIFGFDIHIIFSISTAKRICLINQSTSKMEAIKKKMQMLKMDKENSIDRKEQAEVD
RKNVEEKVGGLEEELHTLEKRLKGTEDELSTHQEKLGQSNDSLEAAEKKASDISAIISLL
NLFSLQAEQEVSDLNKKISGLEDELESAQEKLAISLTKLEDAEKAADESERGRKVIENRS
LKDQEKLQLQEVHLQEAKDIAEDADRKYEEVARKLATVEGDLERGEERAELAESKSTELE
EEMKNAANNLKSLEAAAEKYATKEAIFADEVKTLSDRLKDSEDRAESAEKLVVELEKNID
DVEGSVLSPILNAYQNQFTLLTLHFKTENANEKFQRRHLYLLENQPTDDHTDY

Nucleotide sequence

Length: 1,062

>Harore.CG.MTP2014.S425.g13702.01.t
ATGGCTGAGGATAACATATTCGGTTTCGACATCCACATCATCTTTTCTATTTCCACTGCA
AAGCGCATCTGCTTAATCAACCAATCAACCTCTAAAATGGAAGCCATCAAGAAGAAGATG
CAAATGTTGAAAATGGACAAAGAAAACTCCATCGATAGAAAAGAGCAAGCTGAAGTAGAC
AGAAAGAACGTGGAAGAGAAAGTTGGCGGGCTTGAAGAAGAACTTCATACCCTTGAAAAG
AGACTGAAAGGAACAGAAGACGAACTCAGCACACACCAAGAAAAACTGGGACAATCAAAC
GACTCTCTCGAAGCAGCTGAGAAAAAGGCGTCTGATATCTCTGCGATTATTTCACTTTTG
AATCTCTTTTCACTTCAGGCTGAACAAGAAGTATCTGATCTGAACAAGAAAATCTCCGGT
CTCGAAGACGAACTCGAGAGTGCACAAGAAAAACTTGCGATATCTCTCACTAAGTTGGAA
GATGCTGAAAAGGCTGCTGATGAAAGCGAGCGGGGACGCAAAGTCATTGAGAACAGATCT
CTCAAAGATCAAGAGAAATTACAACTCCAGGAAGTTCATCTGCAAGAGGCGAAGGACATC
GCCGAAGATGCCGACAGGAAATACGAAGAAGTTGCCCGCAAACTTGCTACGGTTGAAGGA
GATTTGGAACGAGGCGAAGAGCGAGCAGAACTTGCTGAGAGTAAATCAACTGAGCTCGAG
GAAGAAATGAAAAACGCTGCAAACAACCTGAAATCTCTCGAAGCAGCTGCAGAAAAGTAT
GCCACGAAAGAAGCAATCTTCGCAGACGAAGTGAAAACGCTTTCGGACCGATTGAAAGAT
TCTGAAGATCGCGCCGAGTCTGCTGAAAAACTGGTTGTGGAATTGGAAAAAAACATTGAT
GACGTAGAAGGTAGTGTTTTGAGCCCTATACTAAACGCCTATCAAAATCAGTTTACTCTT
TTAACACTGCACTTCAAAACAGAAAATGCGAATGAGAAATTTCAACGAAGACATCTCTAC
TTACTAGAAAATCAACCAACGGATGATCACACCGACTACTAA

InterProScan

Pfam
CLZ_dom (IPR032406) - T[46-105] 3.2E-7
Pfam
Tropomyosin (IPR000533) - T[126-306] 1.3E-62
PRINTS
Tropomyosin (IPR000533) - T[130-147] 1.8E-49 - T[166-186] 1.8E-49 - T[191-219] 1.8E-49 - T[221-244] 1.8E-49 - T[277-302] 1.8E-49

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
TPM3_HUMAN 58.781 % 281 4.27E-94
TPM1_HUMAN 58.423 % 286 8.69E-96
TPM2_HUMAN 58.333 % 268 1.05E-88