Aniseed - Transcript Card

Transcript Model

Transcript Id

Harore.CG.MTP2014.S40.g15905.01.t

Possible name(s)

CSAD; GAD1; GAD2

Gene model

Harore.CG.MTP2014.S40.g15905

Location

S40 [154,838 / 160,669]

Sequences

Amino acid sequence

Length: 565

>Harore.CG.MTP2014.S40.g15905.01.p
MNEKQRKNKRSCSLDKYHDSSLLGGYVETRKAEQLMANLILEENRRKTDCKSGEDFGKLF
VKDLYPQAPNGEATEAFLKEVISIIISYVHKTFDRKSKIVDFHHPHQLLDGIEGFSLDIT
KEPQSIEQLLVDCRDTLKYGVKTGHPRFLNQLSSGLDIVSLAAEWITSTANTNMFTFEIA
PVFVLMENIVLQKMREIIGWTEHGDGIFSPGGSINNMYSLMMARNQAFPSVKYDGMNSAP
EMVIFVSKHAHYSNSRPASILGIGLKNVIVVDVDERGRMIPCDLERKILEAQLEGKNPFY
VAATSGTTVLGAFDPIPAIAALCKRHGLWLHVDASWGGGALMSSKHRHLVTGIELADSVT
WNPHKMMGITLQCSALLTKHEGILAECNSMGASYLFQQDKHYDISYDTGDKTIQCGRHVD
IFKLWLSWKAKGDIGFEEHMNKCMDLARQVNVTIVRYLTQRINSLDGFELVMDKHEYTNV
CFWYFPPWMRSMKDDDTRAHLLNKVAPTIKARMMEKGSVMIGYQPLDDKVNFFRCVFSNA
ATLKSDLDFLLSEIQMFGNELKLIQ

Nucleotide sequence

Length: 1,698

>Harore.CG.MTP2014.S40.g15905.01.t
ATGAATGAAAAGCAAAGAAAGAATAAAAGATCGTGTAGTCTGGATAAATACCACGATAGT
TCACTTTTGGGAGGTTACGTTGAAACTCGCAAGGCAGAACAACTTATGGCAAATCTAATT
TTGGAGGAAAATCGGCGTAAAACAGATTGCAAGTCGGGAGAAGATTTTGGTAAACTTTTC
GTCAAAGATCTCTACCCACAAGCACCAAATGGGGAAGCAACAGAAGCATTCCTCAAAGAA
GTGATCAGCATAATAATATCATACGTTCATAAGACCTTCGATAGAAAGTCAAAAATAGTT
GATTTTCATCATCCACATCAGCTATTGGATGGAATAGAGGGATTCAGCCTGGATATTACA
AAGGAACCACAATCTATCGAGCAATTACTGGTTGACTGTAGAGATACACTAAAATATGGA
GTAAAAACAGGTCATCCCCGATTCCTCAACCAATTGAGTAGTGGCTTGGATATTGTTTCT
TTGGCAGCAGAGTGGATCACTTCGACGGCCAACACCAATATGTTTACTTTTGAAATCGCA
CCCGTTTTTGTGCTGATGGAGAACATAGTGTTGCAGAAAATGAGAGAAATCATTGGCTGG
ACTGAACATGGTGATGGAATCTTTTCACCAGGAGGTTCAATAAATAATATGTACTCGTTA
ATGATGGCAAGAAATCAGGCATTCCCTTCCGTAAAGTACGATGGAATGAATTCTGCACCA
GAAATGGTTATTTTTGTGTCCAAACACGCCCATTATTCGAATAGTCGCCCGGCTTCGATC
TTAGGAATTGGACTGAAAAATGTTATCGTAGTGGATGTAGATGAAAGAGGACGAATGATA
CCATGCGATTTGGAAAGGAAAATTCTCGAAGCGCAGTTGGAGGGTAAAAATCCATTTTAC
GTTGCCGCAACGTCTGGTACCACAGTCTTGGGAGCTTTCGATCCCATTCCAGCTATTGCA
GCACTTTGTAAAAGACACGGATTATGGCTACACGTAGATGCTTCTTGGGGCGGAGGAGCG
CTTATGTCGAGCAAACATCGACACCTGGTAACAGGCATTGAACTTGCCGACTCAGTAACT
TGGAATCCGCACAAAATGATGGGAATCACACTGCAGTGTTCAGCATTGTTGACAAAACAC
GAGGGCATACTCGCAGAATGCAACAGTATGGGAGCATCATATTTATTCCAGCAAGACAAG
CATTACGATATTTCATATGATACGGGAGATAAAACAATTCAGTGCGGAAGACATGTAGAT
ATTTTCAAACTCTGGTTATCGTGGAAGGCCAAGGGAGACATAGGATTCGAAGAGCACATG
AACAAATGTATGGACCTGGCAAGGCAAGTTAACGTAACCATAGTACGATATCTGACGCAA
AGAATAAATTCCCTTGATGGATTTGAGTTGGTCATGGATAAGCATGAATACACGAACGTG
TGCTTTTGGTATTTTCCACCATGGATGAGAAGTATGAAAGACGATGATACTAGAGCCCAT
CTACTCAACAAGGTAGCTCCAACGATAAAAGCTCGAATGATGGAGAAGGGAAGTGTCATG
ATAGGATACCAACCATTGGATGACAAGGTCAACTTTTTTCGATGCGTGTTTAGTAACGCG
GCAACTTTGAAAAGCGATTTGGATTTTCTATTGTCGGAAATTCAAATGTTTGGAAATGAA
CTCAAGCTCATTCAGTAG

InterProScan

SUPERFAMILY	PyrdxlP-dep_Trfase (IPR015424) - T[71-561] 1.43E-125
Pfam	PyrdxlP-dep_de-COase (IPR002129) - T[114-484] 2.3E-117
Gene3D	PyrdxlP-dep_Trfase_major (IPR015421) - T[173-420] 1.3E-200
ProSitePatterns	Pyridoxal-P_BS (IPR021115) - T[358-379] .

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
CSAD_HUMAN	50 %	507	2.05E-176
DCE2_HUMAN	56.385 %	630	0
DCE1_HUMAN	57.374 %	673	0