- Transcript 'Harore.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S396.g06258.01.t
Possible name(s)
ARHGAP15; SYDE1; SYDE2
Gene model
Location
S396 [49,255 / 63,488]
Amino acid sequence
Length: 1,367
>Harore.CG.MTP2014.S396.g06258.01.p
MSAVTPDPQQTNGFHSLSRLKRTLSLPLSKIKTRTQNHRETNKAAVSENHENPSVIVRAE
ENGNSHIGRGIIRNQSIFRSMRGPIGRKGDIRVSRIDTGTISNDVRLTLSQAGKLSAKNH
VSQISADCPHVEAPSEVEAQIEKNLPKFIGKKQKHSRARRWPTQVLAKVLEKIHGSGNME
HAAVVIRTIEIKRSASDILGIYIKQVKSVVRNHHSDVTTSSNKPHYRTAIIVSRLAPSSI
AEKQGELRTGDEVLFVNNVDIANLPIKHVAAIMDSSQTLVLIVRSKHGSINNNNVEKLSP
TSNGDVTHSLTYNLAYNKPQSTSTENSALLSPPRVSNGIMGVKGSRIVQLLPLDVPVTSV
YDNDYPSDIGDVSNKNPTKGKVEVEYEKAVGILLEAINGFESENKFSQSSCDAPIKKKGV
NPQSEWDLLTEIVSTMNITSPNADAICSSLQHGQRLPTTPNFPSISELNLQEEPDYDEVA
ASELGDLDSVICSSEEVGVDGYAELFPPPPHRSNSSSSSNGRPENENGFAQPLPSETCSR
KISRPGRSTINSNTTHAKLSRGLSHPATATEDEHKRSFKKSTSLENDSCYGDLMASQNNG
GRKILNSVTVGQRKGWFDKGAKVSMELQKRIEGNTRGRVDDQDGSVSGSDFSTVHGGQFN
VAVQSKSTKQHVASNPKDTVHDQNTWFRRNSGRTSSESSMASVPSRTDIHTSNKSTAEQD
SVPSSPDNVGFEKVSVSNGPEQRTGLKMNRNFPEPHSVDTKTALPIPESQTDAPSSSNRH
LFSKIMSPPRSRKNKLTKKFTKRIKMFGGHDTNDCSNSFEGNIPPMSPNVLSQVNRLHLE
IDLAQQRRLSRQFLLDNGRSSHDSSIKPLDLSEFKKYRPCISSQEAKCVQESIEDNSYKL
ITVVYKGSLVITLYGARDMKKTMSEVYCVMQVDNNVQHRMRTTMKPCRGSVAWNECYEAK
LEEAYELLITLYTWEHKHKTLAKTVLPLASLLSKEDQSHPVKLAVKLESRGTLYIKLSLE
DPSTLAGPKVFGASLQSILDEEQSGLPVPLIVHECIKEVEARGMSVVGIYRLCGSAIAKK
ELRRRYEEDAKTLNLSQENYPDVNVITGILKDFLRELPQPLFPPELLEAITIAMENSSGS
NVVTPVSSAFEPTPVVEFPQYQSETEAKMSQSNHIRSLFEDDNKIHLPPAERATLYALLN
HLKKVSANNAQNKMTCQNLAVCFGPVLLGSINIGSKSLDLTAAIGFKRHIQVLNYMVSNW
TEIPVPERTMVKPEWDLDTDDKRKSKRMSRVSLTRRISYINPNSSSSSCVNIAGLGADID
NRSNSSIIRKSGSLTNILENNFELSTPVEPIDMEKYLEQENRMFSEE
Nucleotide sequence
Length: 4,740
>Harore.CG.MTP2014.S396.g06258.01.t
AGGTGTTTTATCAGATCACCTATCAAGACTTTGTGATAGGGCAAACTATTGATAATGTTG
AAATGAGTGATCAGAATCCATAATGAGTGCTGTTACTCCTGATCCACAACAAACGAATGG
ATTCCACTCTCTCAGTCGTCTGAAAAGAACACTTTCTCTGCCTTTGTCCAAGATCAAGAC
AAGGACTCAAAATCACAGAGAAACGAACAAAGCAGCCGTATCTGAGAATCATGAAAATCC
AAGTGTTATTGTAAGAGCTGAAGAAAATGGAAATTCGCATATTGGACGAGGAATTATCCG
CAATCAAAGCATATTCCGTAGTATGAGGGGACCTATTGGCCGTAAAGGTGACATTCGCGT
AAGCAGAATTGACACCGGAACGATATCCAACGACGTGAGGTTGACACTGAGTCAAGCAGG
AAAGCTTAGCGCCAAAAATCATGTATCGCAAATATCTGCAGATTGCCCCCATGTAGAAGC
TCCATCCGAAGTAGAAGCACAAATTGAGAAGAATTTACCGAAATTCATCGGGAAAAAGCA
AAAACACAGTCGAGCAAGGAGATGGCCAACGCAAGTTCTTGCGAAAGTATTGGAAAAAAT
TCACGGTTCTGGGAACATGGAGCACGCAGCAGTTGTTATCCGTACCATTGAGATCAAAAG
AAGCGCATCCGACATTCTTGGAATTTATATCAAACAAGTTAAAAGTGTTGTAAGAAACCA
TCATTCTGATGTCACAACCTCTAGTAACAAGCCTCATTATCGTACTGCAATCATTGTATC
AAGACTTGCCCCGAGTAGTATTGCAGAAAAACAAGGTGAATTGAGAACAGGAGATGAAGT
TTTGTTCGTCAATAATGTTGATATAGCCAACCTGCCAATAAAACACGTTGCCGCTATTAT
GGACTCTTCTCAGACACTGGTTCTCATTGTGCGATCCAAGCATGGCAGTATCAATAACAA
TAACGTTGAGAAGCTCTCGCCTACATCCAACGGAGATGTTACTCACAGTCTTACATATAA
TCTTGCCTATAATAAACCGCAGTCTACCTCAACTGAAAATTCTGCACTGCTTTCTCCGCC
TCGTGTATCTAATGGAATTATGGGTGTTAAAGGTAGCAGAATTGTCCAACTTCTGCCGTT
GGATGTTCCAGTAACCAGTGTTTACGACAATGATTACCCATCTGATATAGGGGACGTATC
GAACAAGAACCCAACCAAAGGAAAAGTGGAAGTCGAATACGAAAAAGCTGTCGGAATATT
GCTCGAAGCTATAAACGGATTTGAAAGCGAAAATAAATTCTCTCAATCATCATGCGACGC
TCCGATAAAAAAGAAAGGTGTCAATCCTCAGTCAGAATGGGATTTGCTTACAGAAATCGT
GTCGACGATGAACATTACATCTCCGAATGCCGATGCCATCTGCAGTTCTCTGCAGCATGG
ACAAAGGCTTCCCACTACTCCGAATTTTCCGAGCATATCGGAACTCAACTTGCAAGAGGA
GCCAGATTACGACGAAGTAGCCGCATCCGAACTGGGAGATCTCGATAGCGTTATTTGTTC
AAGTGAGGAGGTTGGAGTTGATGGATATGCTGAACTCTTTCCTCCGCCACCTCACCGATC
AAATTCATCATCTAGCAGTAATGGTAGACCGGAAAATGAAAATGGCTTCGCTCAACCCCT
GCCTTCGGAGACATGCAGTAGAAAAATTTCTCGGCCAGGAAGATCCACAATAAACTCCAA
CACAACTCATGCTAAGCTATCGCGTGGACTGTCTCATCCAGCAACAGCCACAGAAGATGA
ACATAAAAGGTCGTTCAAGAAGTCTACATCTCTTGAAAACGACTCTTGTTACGGTGATTT
AATGGCATCTCAAAATAATGGTGGCCGGAAAATCTTAAACAGTGTTACCGTAGGACAGCG
AAAAGGGTGGTTCGACAAAGGTGCCAAGGTATCCATGGAGTTGCAAAAGAGAATCGAAGG
AAACACTCGGGGTCGAGTAGATGATCAGGATGGTTCTGTCAGTGGTTCAGATTTTTCTAC
TGTACACGGTGGGCAGTTCAACGTCGCAGTGCAGTCAAAGAGTACTAAGCAACATGTTGC
CAGTAATCCTAAAGACACTGTCCATGATCAAAATACTTGGTTTCGTCGAAACAGCGGGAG
AACTTCGTCTGAATCATCAATGGCCAGTGTTCCATCTCGAACAGATATCCATACCTCAAA
TAAGTCCACTGCCGAGCAAGACAGCGTGCCGAGCTCACCAGACAATGTTGGATTTGAGAA
AGTTTCTGTGTCTAACGGTCCAGAGCAGCGGACTGGTCTCAAGATGAACAGAAACTTTCC
AGAGCCCCATTCGGTAGACACAAAAACTGCACTACCAATCCCAGAAAGTCAAACAGATGC
ACCGAGTTCATCGAACCGACATCTCTTCTCGAAGATAATGTCACCTCCCCGCTCTCGCAA
GAATAAGCTAACAAAGAAATTCACGAAAAGAATTAAAATGTTCGGAGGACACGATACAAA
TGACTGTTCGAATTCCTTTGAAGGAAACATACCACCGATGTCACCAAATGTGTTGTCCCA
GGTCAACCGCCTCCATTTAGAGATCGATTTGGCTCAACAGCGCAGACTAAGCAGACAATT
TTTGCTAGACAACGGTAGATCTTCTCATGACTCTTCAATAAAGCCACTAGACTTATCCGA
GTTTAAGAAGTACAGGCCATGTATTTCGAGCCAAGAAGCAAAATGTGTACAAGAATCAAT
AGAAGACAACTCATACAAGCTTATCACTGTCGTTTATAAAGGTTCTTTGGTAATAACGCT
GTATGGCGCCCGCGATATGAAAAAGACTATGAGCGAAGTCTACTGTGTTATGCAAGTCGA
CAATAACGTCCAGCACAGAATGCGAACTACTATGAAACCGTGCCGAGGTTCCGTTGCCTG
GAACGAATGTTATGAGGCCAAGCTCGAGGAAGCTTATGAACTCCTTATAACATTGTACAC
ATGGGAACACAAGCACAAAACTTTGGCCAAGACAGTGTTGCCTCTTGCGAGTCTGCTGTC
TAAAGAAGATCAAAGCCACCCAGTTAAACTCGCGGTCAAATTGGAATCTCGAGGGACCCT
CTACATAAAGCTAAGTCTGGAAGACCCTTCTACGTTAGCCGGTCCAAAAGTGTTCGGTGC
AAGCTTGCAAAGCATATTGGACGAAGAGCAGTCTGGTTTGCCTGTCCCTCTGATAGTTCA
TGAGTGCATAAAAGAGGTCGAAGCTAGAGGAATGTCGGTTGTGGGAATATACAGACTGTG
CGGATCAGCGATAGCAAAGAAGGAGTTACGCAGGAGATACGAAGAAGATGCAAAGACCCT
CAACCTTTCGCAGGAAAACTACCCTGATGTGAATGTCATAACTGGCATTCTTAAAGATTT
CTTACGTGAGCTGCCCCAGCCTCTATTCCCTCCGGAGCTGCTAGAAGCTATTACAATTGC
AATGGAAAATTCATCAGGATCGAACGTGGTAACTCCTGTTTCTTCAGCCTTCGAACCGAC
TCCGGTCGTTGAATTTCCTCAGTACCAGTCGGAAACGGAAGCCAAAATGTCCCAATCGAA
CCACATCCGGTCGTTGTTTGAGGACGACAATAAAATTCATCTTCCGCCCGCTGAAAGAGC
GACCCTGTACGCTCTTCTCAATCATTTGAAAAAAGTTTCGGCCAATAATGCACAAAATAA
AATGACTTGCCAAAACCTGGCTGTATGCTTTGGTCCTGTACTGCTGGGATCTATCAATAT
TGGATCAAAAAGCCTGGATCTTACTGCTGCCATCGGTTTCAAGCGACACATTCAAGTTCT
CAACTACATGGTTTCAAATTGGACAGAAATTCCAGTCCCTGAAAGAACGATGGTTAAGCC
TGAATGGGACTTAGATACAGATGACAAAAGAAAATCCAAAAGAATGAGTAGAGTGAGCCT
GACGAGGCGTATCAGTTATATCAATCCCAATAGTTCCAGTTCATCTTGTGTCAACATAGC
TGGTTTGGGGGCTGACATTGACAACAGAAGTAACAGCAGCATAATTCGTAAAAGTGGATC
GCTGACAAATATTTTGGAGAACAACTTTGAATTGTCCACACCAGTAGAGCCGATTGACAT
GGAAAAATATCTAGAACAGGAAAACAGGATGTTTTCTGAGGAGTAGGAATTATGAAGGGT
AAACAATTGATATATTTATCAAGGGTGAAAGAAGCTGCTCTGGTAAAACTTGCATCAGGC
CACAAAACTCTCATTGTGAGTTGTGCCTGCAAATCTGTTTACCTACATGGCACGAGAAAA
TCTAGGCATGTCTTTGTAACATGACATTCCTGTCGCTAACCAGCTTCATTGAACCATAAA
TCACCAAAAAAAGAAACGCTGAAGTTGTTGAGGTGTCCAATGCAAACAATAACCTTATAC
ACAAGGAACAAAGGTTAAAATATTTGGGAAGATATTATTGTTCACGGAATATGTGAGTTA
TGACCTAAGGCGAAAAGTTAACATTTAGTTCGGGTGATTTCAGAAAAAATAGGTTCATGA
AAGGTCATCTAGGTCAAAGGTCTATCTAGCCTAACCAAGGTAAACTGGTGGGCGCACTGC
TTGCATGTGCTGTACACAATTTCCATTTATTAAGGTTGTTACATGTGTCTGCTGACATTC
TGTTTAGTGTCATTGTAATATACTGTCCTTATAAACCAAGTGATGCCAGAGTATATTACA
| SUPERFAMILY |
PDZ_sf (IPR036034) - T[179-286] 5.46E-13 |
| ProSiteProfiles |
PDZ (IPR001478) - T[188-288] 13.33 |
| SMART |
PDZ (IPR001478) - T[197-287] 8.3E-8 |
| Pfam |
PDZ (IPR001478) - T[218-283] 5.3E-8 |
| Gene3D |
C2_domain_sf (IPR035892) - T[882-1021] 2.5E-9 |
| Pfam |
C2_dom (IPR000008) - T[907-1001] 3.4E-5 |
| SMART |
C2_dom (IPR000008) - T[908-1000] 1.6E-4 |
| SUPERFAMILY |
Rho_GTPase_activation_prot (IPR008936) - T[1027-1131] 8.44E-41 - T[1167-1263] 8.44E-41 |
| Gene3D |
Rho_GTPase_activation_prot (IPR008936) - T[1029-1268] 6.1E-49 |
| ProSiteProfiles |
RhoGAP_dom (IPR000198) - T[1033-1264] 41.264 |
| SMART |
RhoGAP_dom (IPR000198) - T[1046-1261] 7.2E-46 |
| Pfam |
RhoGAP_dom (IPR000198) - T[1049-1230] 3.1E-39 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SYDE2_HUMAN | 35.402 % | 239 | 3.59E-64 |
| RHG15_HUMAN | 30.126 % | 114 | 2.27E-26 |
| SYDE1_HUMAN | 36.031 % | 201 | 1.79E-53 |
