- Transcript 'Harore.CG.MTP2014.S5...' >
- Transcript 'KH2012:KH.C2.36.v4.A...' >
- Transcript 'Harore.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S38.g07853.01.t
Possible name(s)
LRP1B; LRP2; SORL1
Gene model
Location
S38 [320,385 / 326,609]
Amino acid sequence
Length: 798
>Harore.CG.MTP2014.S38.g07853.01.p
MATHFGVTLLFSIVFLRVEANFRCKNGQLIPATKFCDLKDDCSDGSDEIVVSRNNPNYVT
CNNAANMDDKVCVINKRQACEGNVQCNNATKCDFDCPNYYRCQKTGVCMSRDTICDGNTC
DGCAEDHGWTTGVGFKCLRDDRNCILPQQLVWDGIPDCDGGADLCFSPEQRNVRITGYTD
LLGKNGHQRDFRNLSTSIFDEDMCFQCLHDDTIIPKNSVCDGVFDCPDMSDECLCNEAPG
ICGKVVSAVSKNPNASCKAGDLQCNDGSCVPRSSVCDGEVQCPEAEDEEFSVCQGTKPCS
SATSEDEACRCKSHDKCTTQMAVPCNGLVECTLELGKSWAFPPGYPNDECDAQCGSSRKI
NCTSANVLFTDIPKISSVRCKLIPGSTAVRYHNLTNEEECDGYLDCDDRDEKFCPHRFYC
LARTGTMVSILNAEVCDGFVDCDDGSDESEKTCQETRFYCPSLGGRKISIDKESVCDAGI
ACDNQDDEKNCTGDGRFYCESGKPLFVPKKMVFDGRIDCNDWSDECPLHPSSNQSEIFHS
RYHMIGNPFLAATRPHRSTVRIAIAMSWVIAAIISLTPFFGSLEYYFVYQVMFPNNPFSL
KLNLDLDSTRKLATSVLTFDLAPNVSTTAITRAFASIPSSSWKDLQDILNKYSAHKEYYS
MTNYFGYYSFSSVCIPNLFTSISDRAWGFSLVVTIFNFFAFIFVSVCYVWIYFRAQKHKG
IRSPSSTTNPIALKQTKSAHIDNISYSVAAIVLLPVNSALNPILYSDVLDKLIHCVRNKI
RSKVHQDHPTDEITHDET
Nucleotide sequence
Length: 2,397
>Harore.CG.MTP2014.S38.g07853.01.t
ATGGCGACACACTTTGGCGTTACATTACTCTTTTCCATTGTTTTTCTCAGAGTAGAAGCA
AACTTCAGATGCAAAAATGGACAGTTGATACCTGCGACTAAGTTTTGTGATCTTAAAGAT
GATTGTTCTGATGGAAGTGACGAAATTGTTGTGAGTAGGAACAACCCGAACTACGTGACA
TGCAACAACGCAGCTAATATGGATGATAAAGTTTGTGTGATCAATAAACGCCAAGCTTGT
GAAGGAAATGTTCAATGCAATAACGCAACAAAATGTGATTTCGATTGTCCAAACTATTAC
AGGTGTCAAAAAACAGGAGTCTGTATGTCACGTGATACAATATGTGACGGCAACACGTGT
GATGGGTGCGCGGAAGATCATGGCTGGACCACTGGTGTTGGTTTTAAATGCCTCAGAGAC
GACAGAAACTGCATTTTGCCACAACAGCTAGTATGGGACGGAATTCCAGATTGTGACGGC
GGTGCAGACCTATGTTTTTCACCGGAGCAGAGGAACGTTAGGATTACAGGGTACACTGAT
TTGCTAGGAAAAAATGGCCACCAGAGAGATTTTCGAAATCTGAGCACGTCCATCTTTGAC
GAAGACATGTGCTTTCAGTGTCTGCACGACGACACGATCATACCGAAAAATAGTGTATGT
GACGGTGTATTCGATTGTCCAGATATGTCGGACGAATGCCTTTGCAATGAAGCGCCAGGA
ATTTGTGGAAAAGTAGTGAGTGCTGTATCTAAAAACCCTAATGCATCTTGTAAAGCTGGG
GATTTGCAATGTAACGATGGAAGTTGTGTTCCTCGCAGCTCCGTATGCGATGGAGAAGTC
CAATGCCCAGAAGCAGAAGATGAAGAATTTTCTGTATGCCAAGGCACAAAACCTTGTTCC
AGTGCTACAAGCGAAGATGAAGCTTGCAGGTGCAAGTCCCATGATAAATGCACTACCCAG
ATGGCTGTGCCTTGTAACGGTTTGGTCGAATGTACGCTTGAGTTAGGAAAGAGTTGGGCA
TTCCCTCCAGGATATCCGAACGATGAATGTGATGCCCAGTGCGGTTCCTCAAGAAAAATC
AACTGCACAAGTGCTAACGTATTGTTTACCGACATTCCGAAGATTTCTTCGGTTCGATGC
AAGCTTATCCCTGGATCAACAGCAGTGCGGTATCACAATTTAACCAATGAAGAAGAATGT
GACGGATATCTCGACTGCGACGACAGAGATGAAAAGTTCTGCCCTCATCGTTTTTATTGT
CTTGCCCGCACAGGTACCATGGTCAGTATCCTTAACGCAGAAGTGTGCGATGGTTTCGTC
GACTGCGACGATGGATCGGATGAATCAGAGAAGACTTGCCAGGAAACAAGATTCTATTGT
CCATCTCTTGGAGGTAGGAAGATCAGCATTGATAAGGAGTCGGTTTGTGATGCAGGAATT
GCCTGTGACAACCAAGATGACGAAAAAAACTGCACTGGCGACGGTAGATTTTACTGCGAA
AGTGGAAAACCTCTTTTTGTTCCTAAAAAGATGGTATTTGATGGAAGAATAGACTGTAAT
GATTGGAGTGATGAGTGTCCATTGCATCCTTCTTCAAATCAATCAGAAATATTTCATTCG
CGCTATCATATGATCGGAAATCCGTTCCTGGCAGCAACTAGACCGCATCGTTCCACAGTA
AGGATCGCCATTGCTATGTCTTGGGTCATCGCTGCTATTATTTCGCTTACTCCGTTTTTC
GGGAGTTTGGAATACTATTTCGTCTATCAGGTCATGTTCCCCAACAATCCTTTCTCGTTA
AAACTGAATTTAGATCTTGACAGTACGAGGAAACTGGCTACGAGTGTCTTGACCTTTGAT
CTTGCTCCAAACGTGTCCACCACAGCTATCACACGAGCTTTCGCCTCGATACCATCCTCT
TCATGGAAAGATCTTCAAGATATATTGAACAAGTACAGCGCGCACAAGGAGTATTATTCG
ATGACAAATTATTTTGGATACTACAGCTTCAGCAGTGTTTGCATTCCAAACTTATTCACC
TCTATATCAGATCGCGCTTGGGGATTCTCGCTCGTTGTGACTATTTTCAACTTTTTTGCG
TTTATATTCGTCTCCGTATGTTACGTCTGGATTTACTTCCGAGCTCAGAAACACAAAGGA
ATAAGATCACCAAGCTCTACGACAAATCCAATTGCTTTGAAGCAGACAAAAAGCGCCCAT
ATCGACAACATCTCCTACTCAGTAGCAGCGATTGTCCTTCTGCCGGTCAACAGCGCACTC
AATCCAATTCTTTACTCGGATGTATTAGACAAGTTAATTCATTGCGTTCGAAATAAGATA
CGGTCAAAAGTTCACCAAGATCATCCAACAGATGAAATAACACATGATGAAACCTAG
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[17-53] 1.2E-5 - T[130-167] 1.3 - T[200-237] 0.031 - T[256-293] 1.1E-4 - T[413-455] 8.9E-4 - T[490-528] 0.077 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[18-49] 3.67E-8 - T[204-235] 3.14E-5 - T[254-290] 1.7E-7 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[20-48] 7.1E-7 - T[256-289] 1.8E-6 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[22-48] 3.24155E-6 - T[205-235] 4.87232E-4 - T[257-289] 1.10595E-5 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[22-62] 8.988 - T[205-236] 8.512 - T[256-294] 11.188 - T[405-454] 9.387 - T[452-492] 8.663 |
| PRINTS |
LDrepeatLR_classA_rpt (IPR002172) - T[27-48] 9.0E-21 - T[267-288] 9.0E-21 - T[427-448] 9.0E-21 - T[467-488] 9.0E-21 - T[504-525] 9.0E-21 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[269-293] . |
| Protein Name | Identity | Bit Score | e-value |
|---|