- Transcript 'Harore.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S38.g01552.03.t
Possible name(s)
SQSTM1
Gene model
Location
S38 [428,481 / 431,887]
Amino acid sequence
Length: 387
>Harore.CG.MTP2014.S38.g01552.03.p
MTLQFKAYLVRGQKNDVKEIRRFAIDTDVSSNYDYLRTKVACVFPDVRDGAFTLLYKDEE
GDFVSFSSDDELMQALAHVDDGVFRIYLKTHRDKPEKKEDDGASASSWTNQFDNFCNDWQ
RFAFGHPHPWQPPHGHHPPPPPHGHHAHPPPFGGHDPTHFGQHPPPPHGHFPPPPPHHGP
HPPPPHHGPHPPPPHHGPHPAPNYWAHTNPWGCAGQSAQPSTSEQDDTKKKCGTDAAATA
YLSTVGQMVANYLQPLGIDVDIDVEHKGKRTKCAESEKDDAKAATTEGDDQQSRKSPGSE
NEWTVVNEGSKQNNTDDDTQAEATAPPTETEIKPPSNIDPRLAEALKQMFTMGFSDEGGW
LSRLLEAHDYNIPRALDAIQPAAGHRA
Nucleotide sequence
Length: 1,529
>Harore.CG.MTP2014.S38.g01552.03.t
AGGTATATTACAGTACCATACTAATAATAAAAAGCAAGAACAATGACTCTGCAATTTAAA
GCTTATCTGGTGAGAGGACAAAAGAATGATGTGAAGGAAATACGGCGTTTCGCTATCGAT
ACCGACGTCTCATCCAACTATGATTATTTGAGGACTAAGGTCGCCTGTGTTTTTCCGGAT
GTTCGCGATGGCGCTTTCACCCTGCTCTACAAAGATGAAGAAGGTGACTTCGTGTCTTTC
AGTTCAGATGATGAACTAATGCAAGCACTTGCCCATGTCGATGATGGTGTGTTTCGGATC
TATTTGAAGACACACCGTGATAAACCAGAGAAGAAAGAGGACGATGGTGCATCTGCGAGC
TCATGGACTAATCAGTTTGATAACTTTTGTAATGATTGGCAACGCTTTGCTTTTGGTCAT
CCCCATCCCTGGCAACCTCCACATGGACATCATCCGCCGCCACCTCCTCATGGACATCAT
GCACATCCTCCTCCCTTTGGTGGACACGATCCTACTCATTTTGGACAACACCCACCCCCG
CCTCATGGTCATTTCCCGCCTCCACCTCCGCATCATGGGCCCCATCCTCCTCCACCCCAT
CATGGGCCCCATCCTCCTCCACCCCATCATGGGCCTCACCCTGCTCCTAATTATTGGGCT
CACACCAATCCTTGGGGATGCGCTGGGCAATCTGCGCAACCTTCAACATCTGAACAAGAT
GATACGAAAAAAAAATGTGGTACAGATGCTGCAGCCACTGCTTACTTAAGCACTGTTGGT
CAAATGGTTGCTAATTATTTACAACCACTTGGCATTGATGTAGATATTGATGTGGAGCAT
AAGGGAAAGCGAACTAAATGTGCCGAAAGCGAGAAGGACGATGCAAAAGCTGCTACGACT
GAAGGGGATGATCAACAATCAAGAAAATCACCTGGATCTGAAAACGAATGGACTGTTGTA
AATGAAGGTAGTAAACAGAATAACACAGATGACGATACGCAAGCAGAAGCTACAGCTCCG
CCTACGGAAACAGAGATAAAACCTCCAAGTAATATTGATCCTCGTTTGGCAGAGGCACTC
AAACAAATGTTTACGATGGGGTTCAGTGATGAAGGTGGATGGTTATCGCGTTTGTTGGAG
GCACATGATTACAACATTCCCAGAGCGCTAGATGCCATCCAGCCTGCCGCTGGTCACAGA
GCTTAAGTTTAATGAAGCTCTGTTGTCGTGCATGTTGTAAATAATGTTAGGCTACCCTAT
AATTTGTAATGATTATCATCGTCATCTGCTTATTGCATGGTACGGCTTATTTTTTATTTT
CCTCTGAACTGGTCTTATTATTTTAGTCATTCATAAAATAGTATAGTGATAAAATAATTT
TTAACCAAAGTAGTTTATAGATCTTTATAACTTTTGTTGTTATATTAATGTAAACCTTGT
GCATGCTTGGGGAGAGTTATTTTACTTTTTGTTTAATTTTCTTCGAATCGAGAATTGAGA
AACAGTAGTAAAATAAAAAATATCGCAAC
| SMART |
PB1_dom (IPR000270) - T[2-91] 1.2E-9 |
| ProSiteProfiles |
PB1_dom (IPR000270) - T[7-91] 17.916 |
| Pfam |
PB1_dom (IPR000270) - T[16-88] 2.1E-11 |
| Pfam |
SQSTM_UBA (IPR033741) - T[335-380] 1.6E-17 |
| SUPERFAMILY |
UBA-like_sf (IPR009060) - T[336-381] 8.75E-15 |
| CDD |
SQSTM_UBA (IPR033741) - T[341-380] 7.74892E-18 |
| Protein Name | Identity | Bit Score | e-value |
|---|