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TRANSCRIPT CARD

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  1. Transcript 'Harore.CG.MTP2014.S3...' > 
  2. Transcript 'Harore.CG.MTP2014.S3...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S38.g01552.02.t

Possible name(s)

SQSTM1

Gene model

Harore.CG.MTP2014.S38.g01552

Location

S38 [428,804 / 431,845]

Sequences

Amino acid sequence

Length: 364

>Harore.CG.MTP2014.S38.g01552.02.p
MTLQFKAYLVRGQKNDVKEIRRFAIDTDVSSNYDYLRTKVACVFPDVRDGAFTLLYKDEE
GDFVSFSSDDELMQALAHVDDGVFRIYLKTHRDKPEKKEDDGASASSWTNQFDNFCNDWQ
RFAFGHPHPWQPPHGHHPPPPPHGHHAHPPPFGGHDPTHFGQHPPPPHGHFPPPPPHHGP
HPPPPHHGPHPPPPHHGPHPAPNYWAHTNPWGCAGQSAQPSTSEQDDTKKKCGTDAADID
VEHKGKRTKCAESEKDDAKAATTEGDDQQSRKSPGSENEWTVVNEGSKQNNTDDDTQAEA
TAPPTETEIKPPSNIDPRLAEALKQMFTMGFSDEGGWLSRLLEAHDYNIPRALDAIQPAA
GHRA

Nucleotide sequence

Length: 1,095

>Harore.CG.MTP2014.S38.g01552.02.t
ATGACTCTGCAATTTAAAGCTTATCTGGTGAGAGGACAAAAGAATGATGTGAAGGAAATA
CGGCGTTTCGCTATCGATACCGACGTCTCATCCAACTATGATTATTTGAGGACTAAGGTC
GCCTGTGTTTTTCCGGATGTTCGCGATGGCGCTTTCACCCTGCTCTACAAAGATGAAGAA
GGTGACTTCGTGTCTTTCAGTTCAGATGATGAACTAATGCAAGCACTTGCCCATGTCGAT
GATGGTGTGTTTCGGATCTATTTGAAGACACACCGTGATAAACCAGAGAAGAAAGAGGAC
GATGGTGCATCTGCGAGCTCATGGACTAATCAGTTTGATAACTTTTGTAATGATTGGCAA
CGCTTTGCTTTTGGTCATCCCCATCCCTGGCAACCTCCACATGGACATCATCCGCCGCCA
CCTCCTCATGGACATCATGCACATCCTCCTCCCTTTGGTGGACACGATCCTACTCATTTT
GGACAACACCCACCCCCGCCTCATGGTCATTTCCCGCCTCCACCTCCGCATCATGGGCCC
CATCCTCCTCCACCCCATCATGGGCCCCATCCTCCTCCACCCCATCATGGGCCTCACCCT
GCTCCTAATTATTGGGCTCACACCAATCCTTGGGGATGCGCTGGGCAATCTGCGCAACCT
TCAACATCTGAACAAGATGATACGAAAAAAAAATGTGGTACAGATGCTGCAGATATTGAT
GTGGAGCATAAGGGAAAGCGAACTAAATGTGCCGAAAGCGAGAAGGACGATGCAAAAGCT
GCTACGACTGAAGGGGATGATCAACAATCAAGAAAATCACCTGGATCTGAAAACGAATGG
ACTGTTGTAAATGAAGGTAGTAAACAGAATAACACAGATGACGATACGCAAGCAGAAGCT
ACAGCTCCGCCTACGGAAACAGAGATAAAACCTCCAAGTAATATTGATCCTCGTTTGGCA
GAGGCACTCAAACAAATGTTTACGATGGGGTTCAGTGATGAAGGTGGATGGTTATCGCGT
TTGTTGGAGGCACATGATTACAACATTCCCAGAGCGCTAGATGCCATCCAGCCTGCCGCT
GGTCACAGAGCTTAA

InterProScan

SMART
PB1_dom (IPR000270) - T[2-91] 1.2E-9
ProSiteProfiles
PB1_dom (IPR000270) - T[7-91] 17.916
Pfam
PB1_dom (IPR000270) - T[16-88] 1.9E-11
Pfam
SQSTM_UBA (IPR033741) - T[312-357] 1.4E-17
SUPERFAMILY
UBA-like_sf (IPR009060) - T[313-358] 8.02E-15
CDD
SQSTM_UBA (IPR033741) - T[318-357] 5.46191E-18

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value