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TRANSCRIPT CARD

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  1. Transcript 'Harore.CG.MTP2014.S4...'
  2. Transcript 'KH2012:KH.L116.4.v4....'
  3. Molecular Tool 'cicl18m17-MO (Hamada's MO)'
  4. Molecular Tool 'Titf>Hox1 (Yoshida2017)'
  5. Transcript 'Harore.CG.MTP2014.S3...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S37.g11477.01.t

Possible name(s)

TRMT5

Location

S37 [319,280 / 321,819]

Sequences

Amino acid sequence

Length: 424

>Harore.CG.MTP2014.S37.g11477.01.p
MSSRIAKTYSLLKAFKFFAKNFKMQKPVKAPAINAVFIAPSEVKGMVNLNREAFTKQVTL
PALYIPQSSLAAFNKTFKTQILKTRGAKFPHQSNSDGEEMGMYRALKQDFDFTNLTQKQK
EALETLRIKPVIERKTLCITYEHYKHREILNAILPEGLDVTSGFERVGHIIHVNLREHQI
PYKNIIGQVLLDKHVGLKTVVNKTSIIDSTYRNFEMEVIAGEEEFVTKVVEYGFTFHFDF
SKVFWNSKLHTEHHEISCDIPKLSHVFDVFAGVGPFAIPLARKGCHVHANDLNTHSYKWL
LHNSKVNKAQLTAYNLDGRQFIKDTLGKHLSTEEAATDQSPEVHVFCYTFSSAEDAVADI
QERVKKHMRESLPENHKITEIRKVSTGKFMYRISFVVPTNVFTTYVEEIEQPKAKKAKTE
DLLI

Nucleotide sequence

Length: 1,494

>Harore.CG.MTP2014.S37.g11477.01.t
AGGTATATGTTATACAGGTGAAGGAAAATATGAATGAAATGTAACATACCAGAATTTCTT
GCTATATGATACAATCAACAACATATCCCAGTAGCCGAAGGTCGCATGAGCTCCAGAATA
GCTAAAACTTATTCGCTGTTAAAAGCCTTCAAATTCTTTGCCAAAAATTTCAAAATGCAA
AAACCTGTGAAGGCACCGGCTATCAATGCAGTATTTATTGCTCCCTCTGAAGTAAAAGGG
ATGGTAAATCTAAACAGAGAAGCATTTACAAAACAAGTGACCCTACCAGCACTGTATATT
CCTCAATCATCACTGGCTGCATTCAACAAAACTTTTAAAACCCAAATACTCAAAACGAGG
GGTGCAAAATTTCCCCATCAGTCGAATAGTGATGGGGAGGAGATGGGAATGTACAGGGCT
TTGAAACAAGACTTTGATTTTACAAACCTCACTCAGAAACAGAAAGAAGCACTTGAAACA
CTTCGCATAAAACCGGTTATCGAAAGAAAAACCTTATGCATAACTTATGAGCATTACAAA
CACAGAGAAATACTCAATGCCATACTGCCTGAAGGATTAGATGTTACATCAGGATTCGAA
CGAGTTGGTCATATAATTCATGTCAATTTGAGGGAACATCAAATCCCTTACAAGAATATT
ATAGGCCAGGTTTTACTGGACAAGCATGTGGGACTAAAGACAGTTGTCAACAAAACCTCC
ATAATAGACAGCACTTACAGAAACTTTGAAATGGAAGTCATAGCTGGTGAAGAAGAATTT
GTTACAAAAGTAGTTGAATATGGTTTTACTTTCCACTTCGATTTTTCAAAGGTGTTTTGG
AATTCTAAGCTTCACACAGAACACCATGAAATCAGCTGTGATATTCCAAAATTATCTCAT
GTATTTGACGTCTTTGCCGGAGTCGGCCCGTTTGCAATACCGCTAGCACGAAAAGGGTGT
CACGTTCATGCTAATGATCTGAATACACATTCATACAAATGGTTACTCCATAATTCGAAA
GTTAATAAAGCACAATTAACAGCATACAACTTGGATGGACGACAGTTTATTAAAGACACT
TTAGGAAAACACCTCAGCACTGAAGAAGCAGCAACTGACCAATCACCAGAAGTACACGTT
TTTTGCTATACATTCTCGTCTGCAGAAGACGCCGTAGCTGATATTCAAGAACGTGTGAAA
AAACACATGAGAGAATCACTGCCAGAAAATCACAAAATTACAGAAATCAGGAAAGTCTCT
ACAGGCAAGTTCATGTACCGCATATCATTCGTGGTTCCGACAAACGTTTTTACTACCTAT
GTGGAAGAAATCGAACAGCCAAAGGCAAAGAAAGCCAAAACAGAAGACCTTTTGATATGA
ATTATGTTTAGGAATGTTTATTTCAAGTGCTTCTTCATTTTGCGAAAATTTGGAATATAC
TATAGTTCATTGCAATTGCATTATGATAGGAATTAAAGTTTGAATTAAACTAAA

InterProScan

Hamap
tRNA_Gua_MeTrfase_euk (IPR025792) - T[46-413] 20.348
SUPERFAMILY
SAM-dependent_MTases (IPR029063) - T[160-398] 1.79E-44
Pfam
MeTrfase_TRM5/TYW2 (IPR030382) - T[163-329] 2.3E-49
ProSiteProfiles
MeTrfase_TRM5/TYW2 (IPR030382) - T[164-399] 69.173

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
TRM5_HUMAN 37.176 % 290 1.8E-93