- Transcript 'Harore.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S36.g15346.01.t
Possible name(s)
HNRNPL; HNRNPLL
Gene model
Location
S36 [429,422 / 440,637]
Amino acid sequence
Length: 450
>Harore.CG.MTP2014.S36.g15346.01.p
MASFEGHAVKRQRLNDNGNESAAKEEYDDAEVPEREHKFREPPQQPNKVLLFTILNAIYP
ITTEVMHTICSTCGDVQRIVIFRKRGVQAMSAQRAKASLNGADIYSGCCTLKIEYAKPTR
LNVYKNDDETWDYSEGFEQEPGNGAQPSLLGDAPAGYRGSYGAGMGEPSMGGPPMGQRPP
RGMGPRPRPPMVRGHLGPRGRGMMPMRPQRPGIMGPPPQPHNMGDFGGMDDFGMGISQSP
VVMVYGLKPERLNANHLFNILCLYGNILKVKFLKSKPGTAMVQMGDPSSVDRAIQNLSGN
RFFGEKLVLGPSKQMFLTDSGGQISELEDGTPSFVDFSNSRNNRFTTTEQAAKNRIQNPA
KVLHFFNAPLDMDEEKVANLCVDFKVNPPVKFTVFKSRSERSTAGLLEFNDRSEALEALT
MLNHYKMDNPSGRYPYILKLCFSTSNSATN
Nucleotide sequence
Length: 1,889
>Harore.CG.MTP2014.S36.g15346.01.t
AGAATTAAAATATTCGATTACAGCATACACTAAATGGCATCCTTCGAAGGTCACGCAGTT
AAAAGACAGCGTTTGAACGATAATGGAAACGAAAGTGCAGCAAAGGAGGAATATGATGAT
GCGGAAGTCCCAGAGAGAGAACACAAATTTAGGGAGCCACCGCAGCAACCAAACAAAGTG
TTATTATTCACCATCTTGAATGCCATTTACCCAATTACCACAGAAGTTATGCATACTATA
TGTAGCACATGTGGTGATGTTCAAAGAATTGTCATTTTTAGGAAGAGAGGAGTCCAGGCC
ATGTCAGCTCAACGTGCGAAAGCTTCACTGAATGGTGCCGATATTTATTCAGGATGCTGT
ACGCTAAAAATTGAGTATGCAAAGCCTACTCGATTGAATGTCTACAAAAATGATGATGAG
ACTTGGGATTACAGTGAAGGCTTTGAGCAAGAACCGGGTAATGGTGCTCAGCCATCACTT
CTTGGAGATGCACCTGCTGGATACAGAGGAAGTTATGGTGCTGGAATGGGTGAACCAAGT
ATGGGAGGTCCACCGATGGGTCAGAGACCACCTCGTGGAATGGGACCACGGCCACGTCCT
CCGATGGTCCGTGGACATCTTGGTCCCCGTGGTAGAGGCATGATGCCAATGCGTCCTCAA
CGACCAGGAATAATGGGCCCTCCTCCTCAACCACACAATATGGGAGACTTTGGTGGCATG
GATGACTTCGGTATGGGCATCAGTCAGAGTCCCGTTGTCATGGTGTATGGACTGAAACCA
GAGAGATTGAACGCAAATCACTTGTTCAACATTCTCTGTCTATATGGAAACATCCTGAAG
GTCAAATTTCTGAAAAGCAAGCCTGGCACTGCAATGGTACAAATGGGTGATCCATCTTCT
GTTGATCGAGCTATCCAAAATCTGTCTGGAAATCGTTTCTTTGGTGAAAAGTTGGTCCTT
GGACCTTCAAAGCAGATGTTTCTGACCGACTCTGGCGGACAAATCAGTGAGCTTGAGGAT
GGCACACCTAGCTTCGTAGACTTCTCCAATTCGAGAAACAACAGATTCACCACAACTGAA
CAAGCTGCAAAGAACAGGATTCAGAATCCAGCAAAAGTGTTGCATTTCTTCAATGCTCCT
TTGGATATGGACGAGGAAAAAGTGGCAAATTTATGTGTGGATTTCAAAGTTAATCCACCT
GTGAAGTTCACGGTATTCAAGTCTCGTAGTGAACGCAGCACTGCTGGTTTGTTGGAATTC
AATGACAGAAGTGAAGCCCTGGAGGCTCTAACCATGCTCAATCATTACAAGATGGATAAT
CCAAGTGGACGATACCCATACATTCTGAAGCTGTGCTTTTCTACATCGAACAGCGCCACG
AATTAAAACGTGTCGATTGGACAAGTATGTATGCATATATACATTGCTAATTTTACAGAA
AACATCCCGATACTAAACAATCAGTCAATTCAATGTATATGTTAAGCATAACTAAATAGA
CTTTTAGACTTCAAATTTAGGCAGCCCAACAGTAAGAAAACATTGATGACGAGTTTACAT
TGACAGCGTTATAGCCCCCGTTAAAAAATGCATCAAAAACGTCATCCACTCTGCGAGAGG
AGGCGAAGTGCCTTCTGCTGCCATCGTAATGATCTAATGAAAAACATAGCAAATAGGTTA
TTGATTTTTTTATACAGCTGTATAAAACTAATTGTATTCGTACATCGATATGTAGTTGTT
GTATGAGGAAATTCAACAGTATTTCTGTGATTCTTTTATGGTGGTCTTTACATTTTCTAC
GGTTTCACTAAGCCTCTCTTGTCGCTTTCTCAACTTGGAAAGATCGTTTTGCATGTGTCG
TAATTCGTGGTTTAGCGAGATGTTAACTG
| TIGRFAM |
HnRNP-L/PTB (IPR006536) - T[16-446] 3.9E-110 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[44-137] 3.3E-30 - T[236-338] 1.3E-26 - T[349-442] 2.6E-33 |
| SMART |
RRM_dom (IPR000504) - T[49-112] 2.4 - T[241-310] 7.9E-7 - T[362-434] 0.91 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[52-134] 2.71E-10 - T[192-207] 1.9E-12 - T[234-311] 1.9E-12 - T[342-442] 5.9E-6 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[240-314] 10.514 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PTBP3_HUMAN | 29.426 % | 128 | 3.68E-32 |
| HNRPL_HUMAN | 53.828 % | 394 | 1.89E-132 |
| HNRLL_HUMAN | 44.524 % | 331 | 1.35E-108 |