- Transcript 'Moocul.CG.ELv1_2.S60...' >
- Transcript 'Harore.CG.MTP2014.S7...' >
- Transcript 'Harore.CG.MTP2014.S2...' >
- Transcript 'Cisavi.CG.ENS81.R91....' >
- Transcript 'Harore.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S358.g15877.01.t
Possible name(s)
COL12A1; FN1; TNN
Gene model
Location
S358 [40,993 / 52,413]
Amino acid sequence
Length: 1,188
>Harore.CG.MTP2014.S358.g15877.01.p
MELIIVLLLCTSVLHSEAQINNIPSPKNLKIVEDSVTDTGFWITWEPVSKADSYRVVLSP
PTIGAGGVGNGITDKFTAVEGLAPDTGYTVRIIPVKGNDEGTAAVVFQRTALPAPTSLFV
VSDSVTANEMVVGWSEVKDAESYTVEVAPSTGVSGPGRGIYKNSVTLRGLTADTLYTITV
KPINWVGLGGAATVKQLTKLPPPANVRVVTETVSHNSMSVHWDPVVGANTYQVSVSPPDG
VLGDGQGITDSYVILRNLQADTQYRIQIAASSAAGLSDYRQAIAKTLSVCYAKGIDFTVD
SFKITCPARCARNQEHVYGTREYTDDSYVCAAAVHDGRIDDNVGGEIVIKKRPGLPHYVG
TGKHGVISQDYGSWHRSFVFGLQIPQNVRVQPGSVTHSTITLEWTAVSGADSYRVSVQPD
LNVVGARPGIEDTKVTLSNLKSDTEYRIYLTATNTLETSEAAIIVQHTALPGPKNVHIVP
NSVTHDRMNVSWYPVAASSHYVVVVRAGETEFTHETHQVSAMIDGLQSGIGYLIGVRAVN
SVGLGEITGVTQYTKLSTPENVVAESVNWHRMHIEWDAVSGAKHYIVSTIPSGIRNASEE
TVQPWIWLEDLSPDTLYDVRVQAVNAHERSRSVVIKQMTALGAPRNLGIESKNHNSFTVM
WDRMKNADSYYVTIRSIDGKYGTEDELSANKFTVTGLKGKTEYQIKVSGRNKLGDGKPAK
LGVTTLIPPPSDLTIRASSINPSQIKVTWEQIFDATGYYMSVTPSAGLSGAGILRRNEAL
LSGLRSGILYEVTVMAFIGAERGVNTSTTFATGLPSPQNVRIDDEYTTTDMLAVEWDVVN
LAEYYNITIKNLASSMLKTITPVYNSSYVFEELPAGTQFLITIYAVGKTRQDGKIKQLGS
PGATAVGVTKLNMPRSIAVVNTTSTEATVAWDLVPTATQYKVFIAPEEGTSGSGVYEDPQ
AHFSGLVEDQTYVVWVYALNSKNNASSDRLELSMVAGGVPDDAFNYDQGGGWLGGNELDQ
PKDSGDVFGTTGYDNDKQSDGATKETTTDNTSWIVIVVICVCLALLILLLIIPCCCDCAR
NRPLLKFHGCCGCCAACSDVGCCGCRGCCPSNTTRQKMDEVDDDDNEVVRSRPHTPTTRM
PGRIRSTDTRLVDKLRFFITIYGNFRYKRNKFLVLTVGSIFLPFFLSL
Nucleotide sequence
Length: 4,447
>Harore.CG.MTP2014.S358.g15877.01.t
ATGGAGTTAATCATTGTGCTATTACTCTGTACGTCAGTACTTCATTCAGAGGCGCAGATT
AACAACATTCCTTCGCCGAAAAACCTGAAGATAGTTGAAGATTCCGTGACTGACACTGGA
TTTTGGATCACTTGGGAACCTGTGTCCAAAGCAGACTCGTACAGAGTGGTTTTGTCACCA
CCTACGATCGGTGCTGGCGGTGTTGGGAACGGAATTACTGATAAGTTTACAGCAGTTGAA
GGTTTAGCACCCGATACTGGATACACAGTGAGGATAATACCTGTAAAAGGAAATGATGAG
GGTACAGCGGCAGTCGTATTTCAAAGAACAGCACTTCCTGCACCAACCAGTTTGTTTGTG
GTATCTGATTCCGTAACTGCAAACGAAATGGTTGTAGGATGGTCCGAAGTGAAGGATGCA
GAATCTTATACGGTGGAAGTTGCCCCTTCAACAGGAGTTAGTGGACCCGGGAGAGGAATA
TATAAGAATTCTGTTACCTTGCGTGGATTGACTGCTGACACTCTGTACACAATTACAGTT
AAACCTATTAATTGGGTCGGTTTGGGAGGAGCAGCCACAGTAAAGCAACTGACGAAATTA
CCACCTCCAGCCAACGTCCGAGTCGTAACCGAAACAGTGTCTCATAATTCAATGAGCGTT
CACTGGGATCCCGTGGTTGGTGCCAACACCTACCAGGTATCCGTTTCTCCGCCAGATGGC
GTACTGGGAGATGGTCAAGGAATCACAGACAGCTACGTTATCTTAAGGAATCTTCAAGCA
GACACACAGTATCGAATCCAAATTGCCGCCAGCAGTGCTGCTGGACTTAGCGACTACAGA
CAAGCGATTGCTAAGACATTGTCAGTTTGTTACGCCAAAGGAATTGATTTCACCGTCGAT
TCGTTTAAAATTACTTGCCCTGCCAGATGCGCTCGAAATCAGGAACACGTTTATGGAACG
CGAGAATATACTGATGATTCTTACGTCTGCGCTGCAGCTGTTCATGATGGGCGCATTGAC
GACAACGTTGGAGGAGAAATAGTTATAAAGAAAAGGCCCGGTCTCCCCCATTACGTTGGA
ACCGGGAAACATGGCGTCATCTCACAAGATTACGGCAGTTGGCATCGTTCCTTTGTTTTC
GGCTTGCAAATACCCCAAAATGTACGTGTTCAACCGGGATCTGTAACACATTCAACTATA
ACCTTGGAGTGGACCGCTGTCAGTGGTGCTGACAGTTACCGGGTTTCTGTTCAACCTGAT
CTAAATGTGGTTGGTGCAAGGCCAGGTATCGAAGATACTAAAGTAACATTGAGCAACTTG
AAGTCTGACACAGAGTATCGTATTTACCTTACCGCAACGAATACACTTGAAACAAGCGAA
GCAGCTATAATCGTTCAGCACACAGCTTTGCCCGGACCGAAGAATGTCCACATAGTGCCG
AATTCTGTCACCCACGATCGTATGAACGTTTCTTGGTATCCAGTCGCCGCTTCGTCGCAT
TACGTTGTAGTTGTCAGAGCTGGAGAGACGGAATTCACTCATGAAACCCATCAAGTTTCA
GCAATGATCGACGGACTTCAAAGTGGAATTGGTTATTTAATTGGAGTGCGCGCAGTCAAC
AGTGTTGGCTTGGGAGAAATTACTGGTGTCACACAGTACACAAAGCTTTCCACTCCCGAA
AATGTAGTCGCAGAATCCGTGAATTGGCACAGAATGCATATAGAATGGGATGCTGTGTCA
GGCGCAAAGCATTACATTGTTTCCACAATTCCATCTGGCATTCGAAATGCATCCGAAGAA
ACAGTTCAGCCTTGGATTTGGTTGGAAGACCTATCTCCAGATACTTTATACGATGTTCGA
GTCCAGGCAGTCAATGCACATGAAAGAAGTCGCTCGGTTGTTATCAAGCAGATGACAGCA
CTCGGAGCACCACGTAATTTAGGGATCGAGTCGAAAAATCACAACAGCTTCACGGTAATG
TGGGATAGAATGAAGAATGCAGATTCGTATTACGTAACGATTCGTTCGATCGATGGGAAA
TATGGTACTGAAGATGAATTGTCAGCAAATAAATTCACAGTTACCGGTCTGAAAGGAAAA
ACAGAATATCAAATCAAAGTTTCCGGAAGGAATAAGTTGGGAGATGGAAAGCCTGCAAAA
CTAGGTGTCACTACGCTGATACCTCCACCTTCAGACCTAACCATTCGGGCCAGCAGTATA
AATCCGTCTCAGATTAAAGTTACTTGGGAACAGATATTTGATGCAACTGGTTACTATATG
TCGGTAACGCCATCTGCAGGATTAAGTGGAGCTGGTATATTGCGAAGAAATGAAGCATTG
CTGAGTGGTCTTAGGTCAGGAATTCTATATGAAGTCACTGTTATGGCTTTCATTGGCGCG
GAGAGAGGAGTTAATACAAGTACAACGTTTGCAACTGGTCTTCCATCACCGCAGAATGTT
AGAATAGATGACGAATACACCACAACAGATATGCTTGCTGTCGAATGGGATGTCGTAAAT
CTCGCTGAATACTACAATATAACCATAAAGAATTTAGCATCCTCAATGCTGAAAACCATA
ACACCAGTCTATAATTCATCGTACGTTTTTGAAGAGCTTCCAGCTGGAACCCAGTTCCTA
ATTACGATATACGCCGTTGGAAAAACAAGGCAGGATGGCAAAATAAAACAACTGGGTTCG
CCAGGGGCAACTGCAGTCGGCGTGACAAAACTCAATATGCCACGCAGCATCGCTGTTGTG
AATACCACCTCTACTGAAGCTACAGTAGCATGGGATTTGGTGCCAACGGCCACACAGTAT
AAAGTATTTATCGCCCCGGAAGAAGGCACATCTGGCAGTGGCGTATATGAAGATCCACAG
GCACATTTTTCAGGCTTAGTCGAAGATCAAACGTACGTCGTTTGGGTGTATGCATTGAAC
TCCAAAAATAATGCTAGCAGTGATCGCCTAGAACTATCTATGGTTGCAGGAGGTGTTCCC
GATGACGCGTTCAATTACGACCAAGGCGGTGGATGGTTAGGAGGGAACGAACTTGATCAG
CCAAAAGATAGTGGCGATGTCTTTGGTACAACAGGGTATGACAACGACAAGCAGTCAGAC
GGTGCCACAAAAGAAACGACTACAGACAACACAAGCTGGATTGTTATAGTCGTCATCTGC
GTTTGTTTAGCACTACTCATTCTCTTATTGATAATACCCTGCTGCTGTGATTGTGCAAGG
AACAGGCCCTTGTTGAAATTTCACGGATGCTGTGGATGTTGTGCTGCTTGCAGCGATGTA
GGATGCTGCGGTTGCAGAGGATGTTGTCCATCCAACACCACAAGGCAAAAAATGGACGAG
GTTGATGATGATGATAATGAAGTGGTCAGGAGTAGGCCGCATACACCAACGACCCGCATG
CCCGGAAGAATACGCAGTACAGACACACGTCTTGTAGATAAACTACGTTTCTTTATCACG
ATTTATGGAAATTTTCGCTACAAAAGAAACAAATTCCTAGTCTTAACAGTAGGCTCGATA
TTTCTACCATTTTTCTTGTCTCTTTAATTTTGCTTTTGTTATTGTAACTAGATTCGTTTA
TGCATCTTGCTTAAGATTTGTATGGTTATACGTATTCCTGTTGTGTCGATGTATGCTTCC
CGACGGTACAAGGGTACACTACATTTCGCAGTAAATTCTGTGGGACATGACCCTATAACC
CTAAGTTCTGAGCCACAGCATTCGTATAGATATAAATTGTACTATCGTGGTACAGAGTTT
GCAGAGGCGTACTAACGAAAAATAACGATAATTGCAATCACTTAAATTGTGCCTCTAGCC
GAAAATCCGACGCCCATCGTCAAGATAACTTTACAATAATATCAACTCAAAAATAAAATT
AATCGTTTACTTACCATATCATGACACTTCATGCATTCACTGTGCAATTTCTTTTCATAA
TGCGAAGGCTTGTCTGACTTTATCAAAAAGTTTAAGGGGTCAGAGAACCATCCCGAAATA
ATAGAAAAGAACCCGATATGAAAATATCAGTGCATTGAGCGTTATTCGAATGTAACTCCG
AATGAGTTTCATGCCATTATTCCATATGCTATGCTATGGAAAGATAATATCCATAAACAT
ATTCCGATTTAAGTTTTTTATGACCCAAGATCTAGGTCTTGAGGAAATGATTATACGGAC
GAGAGGGTTCGTGCCCTATTAAGCGGATGATTCTACGCGTCGTTCACTTTCCCATCATCC
ATCATTCCTCTCCGGCGTTTATTGGCATCATGTCAATGTGTATTCCATTGTATACACCAA
CGATATGCGAATAAAACAGTTCATCGCAGCGTAAATTATGCATGATCAATTTCCAAATTA
AATTTTCCCAATTGCAACGTGTTTGATAGTCGAAAGAAAAAGAGCCTATGCAGAAATCCA
ACTTATT
| Gene3D |
Ig-like_fold (IPR013783) - T[17-112] 1.5E-8 - T[113-197] 4.4E-8 - T[198-286] 3.3E-10 - T[383-470] 1.0E-11 - T[471-555] 1.2E-8 - T[556-638] 2.2E-11 - T[639-728] 3.8E-14 - T[729-815] 2.8E-8 - T[911-995] 4.7E-10 |
| SMART |
FN3_dom (IPR003961) - T[23-103] 5.3E-4 - T[113-189] 2.1E-4 - T[200-277] 4.4E-8 - T[382-459] 1.2E-5 - T[470-545] 1.2E-4 - T[556-630] 6.3E-8 - T[641-716] 2.0E-8 - T[726-803] 7.5E-4 - T[814-893] 0.95 - T[911-986] 6.8E-6 |
| SUPERFAMILY |
FN3_sf (IPR036116) - T[24-110] 7.22E-8 - T[121-283] 1.29E-17 - T[385-554] 1.05E-18 - T[557-721] 4.92E-21 - T[733-887] 1.21E-10 - T[908-982] 2.15E-8 |
| ProSiteProfiles |
FN3_dom (IPR003961) - T[25-114] 11.132 - T[115-201] 7.298 - T[202-292] 12.521 - T[384-472] 14.146 - T[474-557] 8.892 - T[558-642] 11.953 - T[643-730] 14.146 - T[731-815] 6.233 - T[816-912] 7.985 - T[913-1002] 11.511 |
| CDD |
FN3_dom (IPR003961) - T[26-101] 0.00117022 - T[113-198] 7.03273E-5 - T[201-279] 5.82888E-7 - T[385-468] 6.74782E-7 - T[473-546] 2.86878E-4 - T[557-639] 1.37592E-6 - T[642-725] 1.27177E-8 - T[728-812] 0.00609218 - T[914-982] 8.38387E-5 |
| Pfam |
FN3_dom (IPR003961) - T[201-277] 1.9E-5 - T[643-718] 4.3E-9 |
| ProSiteProfiles |
LCCL (IPR004043) - T[284-378] 22.935 |
| Gene3D |
LCCL_sf (IPR036609) - T[287-382] 1.7E-27 |
| SUPERFAMILY |
LCCL_sf (IPR036609) - T[290-380] 5.36E-24 |
| SMART |
LCCL (IPR004043) - T[290-369] 1.1E-11 |
| Pfam |
LCCL (IPR004043) - T[296-378] 2.1E-20 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COCA1_HUMAN | 25.738 % | 94.4 | 2.71E-19 |
| TENN_HUMAN | 25.118 % | 147 | 8.01E-36 |
| FINC_HUMAN | 22.819 % | 103 | 3.24E-22 |