- Transcript 'Harore.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S355.g06076.01.t
Possible name(s)
TBL1XR1; TBL1Y; THOC3
Gene model
Location
S355 [96,069 / 102,502]
Amino acid sequence
Length: 339
>Harore.CG.MTP2014.S355.g06076.01.p
MNHYFIEVKILSLAMDYVQKMQQYFKVNGRQKEYNAHSAKVHSVAWSCDGRRLASGSFDQ
TATILVLDKDRLSREQSYKGHTDSVDQLCWHPSHPDLFATASGDKTVRIWDARSGKCCAT
MPTKGENINICWSPNGQTIAVGNKEDLVTFIDTKKWKAKSYEQFKVEVNEISWNNSNDLF
FLTTGLGTVDILSYPDLKQIQSLRGHTANCICIEFDPTGRYFATGSADAIVNLWDVTELV
CVKTYSRLDWPVRTLSFSFDGQLLASASEDHFIDVSSVATGASVCEVKCESPTFTVAWHP
KLPLLAFACDDKEKYKHDRDAGTIKLFGLPNESSSNDKK
Nucleotide sequence
Length: 4,176
>Harore.CG.MTP2014.S355.g06076.01.t
ATGAATCATTATTTTATCGAAGTAAAGATATTGAGTCTTGCTATGGATTATGTACAGAAA
ATGCAACAATATTTCAAGGTTAATGGGCGACAAAAAGAGTACAATGCACATTCGGCCAAG
GTTCATTCCGTAGCATGGAGTTGTGATGGCAGGAGGCTCGCCTCCGGCTCCTTTGATCAA
ACAGCAACGATACTTGTTCTCGACAAAGACAGACTGTCAAGGGAGCAGTCATATAAGGGT
CATACCGACAGCGTTGATCAGCTATGCTGGCACCCAAGTCATCCAGATCTATTTGCAACC
GCTTCTGGTGATAAAACAGTAAGAATATGGGATGCCAGGAGTGGAAAGTGTTGTGCGACA
ATGCCAACCAAAGGTGAAAATATAAACATCTGTTGGAGTCCTAACGGCCAAACCATTGCC
GTGGGAAACAAAGAAGATTTGGTGACTTTTATTGACACTAAGAAATGGAAAGCGAAGTCA
TATGAACAATTTAAAGTCGAGGTGAACGAAATATCTTGGAATAATTCAAATGATCTTTTC
TTTCTGACGACAGGTCTGGGCACAGTGGATATTTTGAGTTATCCAGATTTAAAACAAATT
CAGTCGCTGAGAGGACACACTGCAAACTGCATATGCATCGAGTTTGACCCGACAGGAAGA
TACTTTGCCACAGGCAGTGCAGACGCCATCGTGAACTTGTGGGACGTTACTGAGCTCGTT
TGCGTGAAAACTTATTCACGCCTTGACTGGCCTGTCAGAACTTTGAGCTTCAGTTTTGAT
GGGCAGCTGCTAGCTTCCGCATCAGAGGATCATTTCATTGATGTTTCCAGTGTTGCCACA
GGAGCTTCTGTCTGTGAGGTCAAATGTGAATCTCCAACATTCACGGTCGCCTGGCATCCC
AAACTCCCTTTGCTAGCATTTGCTTGTGATGACAAAGAAAAGTATAAGCATGATCGTGAC
GCTGGCACGATCAAACTTTTCGGTCTTCCCAATGAGTCCAGTTCAAATGACAAGAAATAA
ATGGTAGCGTTATAATCACACGGGATTGTTCAGTGCTTCAAGTCTGAGAACGTGGTCAGA
GCAATGAAATTTGCACTCCAAACAGTGACGTCAATCAATCTTTTTTGATTCAGCAACACG
TCAAAATGTTACATGCTTCTCGCCCAGAAAAATCATACTTTATATTTCATGCTTTGTACT
TCAATAAAAAGTTAATACAGTGCATATTGGTGATTGGATTCCGGACATTTCAAATACATT
GTTAGAAGAAGTCCCCTAGCCTAACAGAAATTAAACAGGATGAATCAAAGGTGAACATCC
ATACCAATGCATAGACATCACACTAACTCGGTTAATACCATCCATACCAACAGCGAAGGC
AAGGAAAATGTGAAATATTAAGACAACAATACTGAAGAGAGCATATTATTGAATTCCTAA
AACACCTTAGTCAAAGTTTCCTGTTTTGAATTCGGGAGTGTAGTTTGAATGCAAATACCA
AATATACAACGTTTATCACCAAATTCATATTCATCTCCAAAACCAAGTATCCCTACATCT
CTACTTACCACTAACTAACATCTGTTCTAGAACTTGCCTAATACCCTCAGTTATGTTAAC
ATCAATCACGCTTCACAAAACATCTAATAAGCAGTAAAATAAATGCGACAAAAACCACAG
GTATGGTATACAGAGCATGTTTTGACTACATCCTTATATAAAATGATTTTCTAGTCTGAA
ATAAACTAAACATCCAGTACACCAAAGTCATTCCATGAAAAAAAACTAAGAGGCAATTAA
AATAATTTTGCCATTATGATGGTAGAGTCGCAGTACATTTGCGCTTTTGTACACTTTGCA
CTGAAACTACAGTATATACTCGTGCATAAAACACATTTTTTTGTACTCAATACAAAAGAT
TGGAAGTGCAGCTTATCAGGGGTTAATTTGCAATTTCAGCTATGAAAGTTTTGTATTAAC
TTCACAAGATAAAATATGGTATGTTTCTTATGCAGAAGTGAGACATACTAGAGAGCATTT
GGTATATCCCATAGTCATATTGTTTTAGAGGTATGTACAATTTGCTGGAGAGGCTTCACA
ACCTAACTTGACGTTAGTCAAGGCTTGGACTGTAAATATAAAAAAAGAGAATGCTTAAAT
TTCAGCAATGCTTGGTCCCCTACTATGATTCTATAGTTTGCAAGACACCTAAAACCAACA
TAATGCCAACTGCATAAAATATTTTGAGATCTATTCTAAATAATACTCTGCAAATCAAAA
CTTCTAGTTACAAGCAACACTAATTAGAGATTCTAGAAAAATAAAACCCTTCCATACAGG
TGATAGAATAATAGATTTAGTCTAGAAACTTAAGAATTTTTTCTCTTGAGAGGCAACAGA
ACACAGCAGTCAAATTCCAATCTTGTATACTGTTAATAATCACAAGGTGGCGACACATAC
ACAATCACTCTGGTATTAAATTTGTTGGCAAGAATTTTCAAGGATGAAGTTAAATACATC
CAAATTCCCATCTACAATACAGTGTACAAAAAGCCTACTTGTACAGTTTCCAGCTTACAA
AGACCAGTGTTTAACTTACCGTACACGGTTTTCAATGATTTTTGACTAGTGATTCCTTAG
CAACAAAGGAAATAAAACTGTATGTTTATAATAATATACTAGCGAGTTTGCGGGAAAATG
GTCAAAATGCTGAGTAGAGAAAGATTGGATATCAGGTTTAAGAATTCATTAAGAGTAATA
TTCATGTATACTCTTAGACCCAGGAAAATAAATGGCAAAGAATAAATGACATTTAAAGGC
ACTCTCTTCACTAGCAAATAAAAGTGATAAAATATTGATATAAGAATAAATATACAGTAT
ACAGCATGCATCATAATGATACAGCACACCATTCTCCACTTGCACAAAATATACTGTAAA
AAGGATTCTATACGGTGTCAACAAAACAGTGGATTCATATTATGGTATTTTGTTATGAAA
TTGACATGCTGCCAACTCTTAACAGGCCTAAAATTAGATATTTTGAGATCCAAAAACTGG
GGTCAAACGGCGTAATTATTAAGATTATGTCAATGTTACAGAATTACCGGAATGCTTAAC
ATCAACTTCCCAAACTGTCAATGACATTTTATCTAATTCACAACTATTGAATATAATTAC
AGCCAGATATTTTTTAACATTTTGTAAGCAAATAATGTGGCTATGCTGCAAAAGCTCCAT
GCCTTAAAGTTTAAAAGCTAGCATCACCATAGGTAAAGCCAATAGGATACAGTTAATTAT
TCCGTTTTCAATTTCTTTTAGGGATTGAATTTGAAATTTCGATTTCATTAGAGAGTTGTA
AGTTTGTAAATTGTAAAAGGGAAAAGTGTTAGTCGCTTAGATATAAATGCAGAGAATTAA
CAGGTGGTTAAATCAAGTCAGTGAAAAATTTACCAATCAGCTTACAGTGAATGATAAGTG
GTCAAATTTCCCATAACATCATTACCTTCGTTTTTCCATGCGGAAAATACTCTAGGAATA
TGCTTTCAAGCCAACACGCAGCAGTCAACATACATTTGTACGCACATAATAGGGTTCTCA
TGATTCTATACAATTTTTCGGATTAGGGTGGAAACTATTCTATATTGTATCGAAACAGAG
GTGGGCAAACTTTTTGTGCACAAAAGGTTAGTTACCAAAACTGATAATATATATAATAAT
TTTTATTTAATTAAATAATTCTATACTGATTCTATACTTAATTAAAGTCTCGCATTAAGT
GCACATACTTTTGTGTCCTTCTGCACACAGTGACTACAAAAATTAGAGGGAACATTGCTT
GCACGCAGTACCATGCCAACCTCTGCCTCAAAACAAGGTTTACTAATACCATGGGTATTT
TCCGTGTCTACGTTACCGAGACGACTTGCACACGCAGAATGGTACCTTTATGTGATGACG
TCACATATATATATAGTAAAATCATTACTTTGTAAAAACAAAAGAATAAACTTGAATTTA
AAATGAAGGTAATAATAATTTGCTATGAAATTAACGTTAAATAGTATTTTGATTGTATTC
GTAAACATCCCTCGTACGAACTGAGATGAACTTATAAATAAGGGCCTAACGTACACTGCA
GAAGGGTGGGTTACACACCCCAATTTATTAGTTTGT
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[14-157] 7.2E-31 - T[158-318] 1.8E-29 |
| SMART |
WD40_repeat (IPR001680) - T[27-68] 0.001 - T[71-111] 9.2E-11 - T[114-152] 5.1 - T[196-235] 5.9E-9 - T[238-277] 0.59 - T[280-318] 270.0 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[28-312] 3.66E-60 |
| Pfam |
WD40_repeat (IPR001680) - T[31-61] 0.0018 - T[76-111] 9.3E-6 - T[250-272] 0.14 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[34-64] 9.071 - T[78-120] 15.02 - T[203-244] 14.585 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[34-286] 26.551 |
| Pfam |
TIF_beta_prop-like (IPR013979) - T[116-226] 4.8E-8 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TBL1R_HUMAN | 27.138 % | 92 | 1.44E-20 |
| TBL1Y_HUMAN | 27.465 % | 87.8 | 3.79E-19 |
| THOC3_HUMAN | 71.384 % | 494 | 2.61E-177 |