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TRANSCRIPT CARD

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  1. Transcript 'Harore.CG.MTP2014.S3...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S354.g03235.01.t

Possible name(s)

SELENOT

Gene model

Harore.CG.MTP2014.S354.g03235

Location

S354 [89,363 / 90,189]

Sequences

Amino acid sequence

Length: 213

>Harore.CG.MTP2014.S354.g03235.01.p
MTRTPPWLSQNTSKKVVSCFSCQRKPGFYMDRLTFFVVATTAMFVLKDLAASTEVAAQPD
SDDIPVKSLRNKFAAPVLKFLIISQRYSDLKIEAGNYPPPKAYQTIASLISLLKFVFIGC
ILTGTNPFPYFGVETPSFYIWCRENMVYAAMMVFFISNAIETQLVSTGAFEIILNDITVW
SKLQSGRIPRVDELMQIIESQMKGSGNFETIHG

Nucleotide sequence

Length: 642

>Harore.CG.MTP2014.S354.g03235.01.t
ATGACCAGAACACCCCCCTGGCTTTCGCAGAACACCTCAAAAAAAGTTGTTAGTTGTTTT
TCTTGCCAAAGAAAGCCAGGTTTCTACATGGATCGTTTAACTTTTTTTGTTGTTGCGACA
ACTGCAATGTTTGTGTTAAAGGATTTGGCAGCCAGTACTGAAGTAGCGGCTCAACCTGAC
TCAGATGACATTCCAGTGAAAAGTCTTCGCAACAAATTTGCTGCACCGGTTTTGAAATTT
CTGATAATAAGTCAACGTTACTCAGACCTCAAGATCGAAGCAGGGAACTACCCTCCCCCC
AAAGCCTATCAAACTATTGCTTCACTGATTTCTTTATTAAAGTTTGTTTTTATTGGATGT
ATTTTAACTGGAACCAATCCTTTCCCATATTTTGGAGTGGAAACCCCATCATTTTACATT
TGGTGCAGAGAAAATATGGTATATGCCGCCATGATGGTTTTTTTTATATCGAATGCTATC
GAAACTCAACTTGTGTCGACCGGTGCATTTGAAATTATCCTCAACGACATAACAGTTTGG
TCAAAACTTCAGTCAGGTCGTATACCACGGGTTGATGAACTCATGCAGATTATTGAATCC
CAAATGAAAGGAAGTGGAAACTTTGAAACTATTCATGGTTAA

InterProScan

PANTHER
Selenoprotein_T (IPR019389) - T[2-21] 2.9E-50 - T[30-58] 2.9E-50 - T[82-209] 2.9E-50
TIGRFAM
Selenoprotein_Rdx-typ (IPR011893) - T[83-199] 1.4E-14
Pfam
Selenoprotein_Rdx-typ (IPR011893) - T[159-199] 6.3E-9
SUPERFAMILY
Thioredoxin-like_sf (IPR036249) - T[166-205] 1.39E-9

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SELT_HUMAN 44.505 % 157 8.65E-49