- Transcript 'Harore.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S327.g04987.01.t
Possible name(s)
GSX2; HOXA2; MNX1
Gene model
Location
S327 [38,323 / 42,541]
Amino acid sequence
Length: 591
>Harore.CG.MTP2014.S327.g04987.01.p
MKEFELDIICNDRHFEYNRTTVVQYPLYNMILSASAPRQLSTTPLHRRILSSDGLPDGNL
PAEYSSDSEDRSRNTHDEPFTKQSTSNINATERSAMNEADVQAPDSQVLISPQMMKYSSL
VDSEGFRSSPSSTTSTSSPSRSSFTSVDSMAKSSPDRRESSVLTTTCPDFMKPCKVNDSF
PNEQKCSKFSIAALLAPEVEKALHRGRGISPKSNNIGQNNRHHPYSHIGKTHRRNSKLMD
EPSSIPVATQFYHQRDHQRLDSMNASPAIDVVSYDNYHHSSGRDSHGSGSNFSSDEDNTP
CLITSSQSQPRQPSVASTAGTFCLGIPKPDMEAFQNQEKQGQFSPMSPENPRPRGAFLGN
SSEFYHMYNGQASQYPMYNPYQMHPFTMAAMLAVAGVEKQQKFPDQHNSPVIVNPRRISG
EKRISPTGEMALPQFSSFQPHGNVPLASHPPSFPQQPVMPFPGVPAHVPFPTHRGLLCTL
PNQQAAMEWNGALMRRLIEFPGQIPPGILNKSRRPRTAFTSQQLLELERQFRQNKYLSRP
MRFEVATRLCLTETQVKIWFQNRRMKWKRNKKEREESQQGGCDSHNTSTTQ
Nucleotide sequence
Length: 1,776
>Harore.CG.MTP2014.S327.g04987.01.t
ATGAAGGAATTCGAACTTGATATAATTTGTAACGACCGCCATTTTGAGTACAATCGAACG
ACTGTAGTTCAGTACCCGCTCTATAATATGATTCTAAGCGCGTCCGCTCCTCGTCAATTA
TCAACCACTCCGCTGCATCGACGGATTCTTTCTTCCGACGGTCTTCCCGATGGGAATTTA
CCGGCAGAATACAGTTCTGATTCAGAAGACAGATCACGCAATACCCACGACGAACCTTTC
ACAAAACAGTCAACCAGTAACATAAATGCAACGGAGAGATCTGCGATGAATGAGGCTGAT
GTTCAAGCTCCCGACAGTCAAGTTCTTATCTCCCCCCAAATGATGAAGTATTCCAGTCTG
GTAGATTCGGAAGGGTTTAGATCGTCTCCATCCAGCACTACATCAACATCTTCTCCGTCT
CGATCTAGTTTCACTTCCGTAGATTCGATGGCAAAATCTTCTCCTGACCGACGAGAATCT
TCTGTTCTAACTACCACGTGTCCAGACTTCATGAAACCGTGTAAGGTTAATGATTCGTTT
CCGAACGAACAAAAATGTTCCAAATTCAGTATCGCTGCTTTGCTGGCTCCTGAAGTTGAA
AAAGCATTACATCGGGGACGAGGCATTTCTCCGAAGAGCAATAATATCGGACAGAACAAC
CGACATCATCCGTATTCCCATATCGGTAAAACTCATCGAAGAAATTCAAAGTTAATGGAT
GAACCAAGCTCTATCCCAGTGGCGACACAATTTTACCACCAGAGAGACCATCAACGACTC
GATTCTATGAATGCTAGTCCAGCGATAGATGTAGTAAGCTACGATAACTACCATCATTCG
TCCGGCAGAGATTCCCACGGTTCGGGATCAAATTTCTCCAGCGACGAAGATAACACTCCC
TGTCTTATTACCTCCTCTCAGTCCCAGCCTCGCCAACCTTCGGTGGCGTCCACAGCTGGG
ACTTTCTGTCTTGGAATCCCTAAGCCTGATATGGAGGCCTTTCAAAACCAAGAAAAACAG
GGACAATTTTCCCCAATGTCCCCGGAAAACCCAAGGCCAAGAGGAGCCTTTTTAGGTAAC
TCTTCAGAATTCTATCACATGTACAACGGGCAAGCTTCGCAATACCCTATGTACAACCCG
TATCAAATGCATCCGTTCACCATGGCGGCTATGCTTGCCGTTGCCGGAGTGGAAAAACAG
CAAAAGTTCCCCGACCAGCATAACTCTCCCGTCATTGTGAACCCGAGAAGAATAAGCGGC
GAGAAAAGAATATCCCCTACCGGAGAAATGGCTCTTCCTCAATTTTCCTCGTTCCAACCT
CACGGAAACGTCCCGCTTGCTAGCCATCCGCCTAGCTTTCCGCAACAACCAGTCATGCCA
TTTCCAGGAGTTCCAGCCCATGTTCCTTTCCCGACCCATCGTGGACTGTTGTGCACCTTG
CCAAATCAGCAAGCTGCTATGGAATGGAACGGCGCGTTGATGCGAAGGTTAATTGAATTT
CCAGGTCAAATACCTCCCGGAATTTTGAATAAGTCCCGCCGTCCCCGCACTGCATTCACA
TCCCAACAACTCCTGGAACTGGAAAGACAATTCAGGCAAAATAAGTACTTGTCCAGACCA
ATGAGATTTGAGGTAGCGACCAGGCTATGCCTTACAGAGACACAGGTGAAAATCTGGTTT
CAAAACAGAAGAATGAAGTGGAAAAGAAACAAGAAAGAACGAGAGGAATCACAGCAAGGT
GGTTGTGACTCCCATAATACCAGTACCACGCAATGA
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[501-572] 8.13E-25 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[510-570] 21.751 |
| SMART |
Homeobox_dom (IPR001356) - T[512-574] 2.5E-24 |
| Pfam |
Homeobox_dom (IPR001356) - T[513-569] 1.0E-21 |
| CDD |
Homeobox_dom (IPR001356) - T[513-571] 4.67499E-23 |
| PRINTS |
Homeobox_metazoa (IPR020479) - T[534-545] 4.4E-7 - T[549-559] 4.4E-7 - T[559-568] 4.4E-7 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[545-568] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HXA2_HUMAN | 55.422 % | 91.3 | 8.86E-20 |
| MNX1_HUMAN | 57.391 % | 128 | 3.06E-32 |
| GSX2_HUMAN | 46.61 % | 89.7 | 9.87E-20 |
