- Transcript 'Harore.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S31.g07310.04.t
Possible name(s)
ACTN1; ACTN2; ACTN4
Gene model
Location
S31 [23,199 / 26,462]
Amino acid sequence
Length: 888
>Harore.CG.MTP2014.S31.g07310.04.p
MYQQQEMLDDHDYMAQEDQWDREGLLDPAWEKQQRKTFSAWCNSHLRKAGTQIEDIEKDF
QNGLKLMLLLEVISGERLPKPDRGRMRFHKIANVNKALDFITSKGVKLVSIGAEEIVDGN
AKMTLGMIWTIILRFAIQDISVEESSAKEGLLLWCQRKTAPYKNVNVQNFHMSPYPPANI
ISYYNSWKDGLAFCALIHRHRPDLIDYDSLKKDDPLTNLNTAFDVAEKYLDIPKMLDAEG
KQYVLILRFSILLGIVEAQFEVECLLNIALTEMLEMAKPDEKAVMTYVSCYYHAFSGAKK
TETAANRICKVLKVNQENEQLMDEYERLASDLLEWINRMRPWLENRTTDNTMEGVQKKLD
DFRDYRRHQKPPKAEEKGQLEAAFNTLQTKLRLSNRPAFMPSEGKMVSDIANAWKGLEGA
EKGYEEWLLSEMRRLERLDHLAKKFYHKATIHESWTEGQEERLRSTDYKTCNLQEIKVKD
CFSSILRFSSYIQVIHFLSIIQAMSKKHDAFETDLAAHQDRVEQIAAIAQELKYYYTLST
VDLEYHDVATINARCQDICLEWDRLGEATSKRREALLNMEKCLEAIEQLYLEFAKRAAPF
NIWMDGAMEDLEDMFIVHSTEEIKGLITAHEQFKATLSDAEQEKNIIMSLMTDVEKHKRM
YNLPQEIENVYTMLTPEEIDSKWQKVRELVPKRDSSLQMELAKQMNHERLRVEFATLANK
VGPWIQAKTHETIQMTLNIKGSLENNLTNLKIYQQNIQSYQPNIDELEGYHQKVQEALIF
DNLHTSFTMEHIRVGWEHLKLTVSRTINEITNQILLRDAKGITEEQMNEFRNSFNHFDRV
SGDKFTIFSMLLSFSTSVLCVCLYMNLPSDRDKIVKVSAVLRRMRMGF
Nucleotide sequence
Length: 2,667
>Harore.CG.MTP2014.S31.g07310.04.t
ATGTATCAACAACAAGAAATGCTTGACGATCATGATTACATGGCGCAGGAGGACCAATGG
GATCGCGAAGGCCTTCTAGATCCTGCTTGGGAGAAACAGCAGCGAAAGACATTCTCCGCT
TGGTGTAATTCTCATTTGAGAAAAGCTGGTACCCAAATCGAAGACATTGAAAAGGACTTT
CAGAATGGTCTCAAACTTATGCTTTTGCTCGAGGTCATCTCTGGAGAGCGGCTACCCAAG
CCAGACCGTGGCAGAATGCGTTTCCACAAGATTGCCAATGTCAATAAAGCCCTAGATTTC
ATCACTTCGAAAGGGGTCAAGCTCGTCTCCATTGGAGCTGAAGAAATTGTTGATGGCAAC
GCAAAAATGACACTTGGCATGATCTGGACAATCATCCTGCGATTTGCTATCCAAGACATT
TCTGTTGAAGAGTCATCTGCAAAGGAAGGTCTTCTGTTGTGGTGCCAACGTAAAACTGCT
CCTTACAAGAATGTGAATGTTCAGAATTTCCATATGAGCCCATATCCGCCTGCTAACATA
ATTTCGTATTACAATAGCTGGAAGGATGGCCTTGCTTTCTGTGCCCTGATTCACAGGCAT
AGGCCCGATCTCATTGACTACGACTCGCTCAAAAAGGATGACCCATTAACCAATTTGAAT
ACTGCTTTCGATGTCGCTGAAAAGTATCTCGATATCCCAAAAATGTTGGATGCAGAGGGT
AAGCAATATGTTCTTATTCTTAGGTTTTCTATATTACTAGGCATAGTGGAAGCCCAGTTT
GAAGTCGAATGTTTGTTGAATATTGCATTAACAGAGATGCTAGAAATGGCAAAGCCAGAT
GAGAAGGCCGTTATGACCTATGTGTCATGCTATTATCATGCGTTTTCAGGAGCAAAGAAG
ACTGAAACCGCAGCCAATAGAATTTGCAAGGTGTTGAAGGTTAACCAGGAAAATGAACAG
CTTATGGATGAGTATGAAAGGCTTGCTTCTGATCTTCTTGAATGGATCAACCGTATGCGC
CCATGGCTCGAGAATCGTACAACAGACAACACTATGGAGGGTGTTCAAAAGAAATTAGAT
GATTTCAGAGATTACAGGCGGCATCAAAAACCACCAAAGGCTGAAGAGAAAGGACAATTG
GAGGCTGCATTCAATACTCTGCAGACAAAACTTCGACTCAGCAACAGGCCTGCTTTCATG
CCATCTGAAGGAAAAATGGTATCTGATATTGCCAATGCTTGGAAGGGATTGGAAGGAGCA
GAGAAAGGCTATGAGGAGTGGTTGCTGTCAGAAATGAGAAGATTGGAACGACTTGATCAT
TTAGCCAAGAAATTCTACCACAAGGCAACAATCCATGAATCTTGGACTGAAGGCCAAGAG
GAGAGACTTAGGTCCACGGATTACAAGACTTGTAATCTACAAGAAATCAAGGTAAAAGAT
TGCTTTTCCTCCATCTTACGATTCAGCAGTTACATACAAGTAATTCACTTCCTATCTATT
ATTCAGGCTATGAGCAAAAAGCATGATGCATTTGAAACTGACCTTGCTGCTCATCAGGAC
AGAGTGGAACAGATTGCTGCCATCGCTCAAGAACTCAAGTACTATTACACATTATCCACT
GTTGACTTGGAATACCATGATGTTGCCACTATCAACGCACGCTGTCAAGACATCTGCCTG
GAATGGGACAGGCTTGGAGAGGCCACAAGCAAGCGCAGGGAAGCTTTGCTGAACATGGAG
AAATGTTTGGAAGCCATTGAACAACTTTACCTTGAATTTGCAAAGAGAGCTGCTCCGTTC
AATATCTGGATGGATGGTGCCATGGAAGATCTCGAAGACATGTTTATTGTTCACTCAACT
GAGGAAATCAAAGGACTGATCACTGCCCACGAACAATTCAAAGCTACTCTGAGTGATGCA
GAGCAAGAGAAGAACATCATCATGTCACTCATGACTGATGTAGAGAAACATAAGCGCATG
TACAACCTGCCCCAAGAGATCGAAAATGTGTACACGATGCTCACCCCAGAAGAGATTGAC
TCCAAGTGGCAGAAGGTGAGGGAACTTGTACCCAAACGTGACAGCTCTCTGCAGATGGAA
CTAGCGAAACAGATGAACCATGAACGCCTTCGCGTAGAATTCGCCACTCTGGCCAACAAG
GTCGGCCCATGGATCCAGGCCAAGACTCATGAAACTATCCAGATGACTCTTAACATCAAG
GGATCTCTGGAAAACAATTTGACAAACTTGAAAATCTACCAACAAAACATTCAATCTTAT
CAGCCAAACATTGATGAATTGGAAGGATACCATCAGAAAGTGCAAGAAGCATTGATATTT
GACAATCTTCACACCTCCTTCACAATGGAACACATCCGAGTCGGATGGGAACACCTGAAA
TTGACCGTTTCCAGGACCATAAACGAGATCACGAACCAGATCCTGCTAAGAGATGCCAAA
GGAATCACGGAAGAACAGATGAACGAGTTCCGCAACTCTTTCAATCACTTTGACCGGGTC
AGTGGCGATAAGTTTACTATTTTTTCAATGCTATTATCATTTTCTACCAGTGTGTTGTGT
GTTTGTTTGTATATGAATTTGCCATCAGATAGAGATAAAATCGTAAAAGTTTCAGCTGTT
TTACGCAGGATGAGAATGGGGTTCTGA
| Gene3D |
CH_dom_sf (IPR036872) - T[18-142] 2.0E-43 |
| SUPERFAMILY |
CH_dom_sf (IPR036872) - T[21-240] 3.6E-77 - T[276-295] 3.6E-77 |
| ProSiteProfiles |
CH-domain (IPR001715) - T[32-136] 16.976 - T[145-293] 12.401 |
| Pfam |
CH-domain (IPR001715) - T[33-136] 2.1E-22 - T[146-239] 9.3E-16 |
| CDD |
CH-domain (IPR001715) - T[34-136] 5.73164E-21 - T[146-295] 1.91409E-19 |
| SMART |
CH-domain (IPR001715) - T[34-134] 1.0E-22 - T[147-258] 1.3E-14 |
| ProSitePatterns |
Actinin_actin-bd_CS (IPR001589) - T[34-43] . - T[108-132] . |
| Pfam |
Spectrin_repeat (IPR002017) - T[321-429] 1.7E-13 - T[498-577] 9.2E-11 - T[589-698] 2.6E-12 - T[711-809] 3.7E-8 |
| SMART |
Spectrin/alpha-actinin (IPR018159) - T[323-429] 0.71 - T[443-577] 1.8E-5 - T[591-698] 3.0E-4 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ACTN2_HUMAN | 64.501 % | 1093 | 0 |
| ACTN3_HUMAN | 62.439 % | 1059 | 0 |
| ACTN1_HUMAN | 65.139 % | 1100 | 0 |