Login
Help

TRANSCRIPT CARD

Submit your Data

  1. Transcript 'Haaura.CG.MTP2014.S1...' > 
  2. Transcript 'KH2012:KH.C12.153.v1...' > 
  3. Transcript 'Cisavi.CG.ENS81.R254...' > 
  4. Transcript 'Cisavi.CG.ENS81.R4.4...' > 
  5. Transcript 'Harore.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S294.g03565.02.t

Possible name(s)

LSM10; LSM2; SNRPD1

Gene model

Harore.CG.MTP2014.S294.g03565

Location

S294 [14,357 / 14,723]

Sequences

Amino acid sequence

Length: 121

>Harore.CG.MTP2014.S294.g03565.02.p
MKLARFLMKLSHETVTIELKNGTQVHGTITGVDICMNTHLKSVKMTVKNREPVSLESLSI
RGNNIRYYILPDSLPLDTLLVDEGPKPRGGARGDRGRGRGRARGRGRGGRGRGRGGPRGR
F

Nucleotide sequence

Length: 366

>Harore.CG.MTP2014.S294.g03565.02.t
ATGAAGCTTGCTAGATTTTTGATGAAACTCAGTCACGAGACGGTTACCATTGAATTGAAG
AATGGTACCCAGGTCCACGGGACCATTACGGGAGTTGACATTTGCATGAACACTCATCTG
AAATCAGTGAAAATGACGGTTAAGAACAGAGAACCGGTCAGCTTGGAATCTCTCAGCATT
CGTGGAAACAACATTCGCTATTATATTCTACCTGACAGCTTACCCCTGGACACCTTACTG
GTCGACGAAGGACCGAAACCCAGAGGTGGAGCGAGAGGTGACAGAGGTAGAGGACGTGGA
AGAGCCAGAGGACGCGGACGGGGAGGAAGGGGCCGTGGCAGAGGTGGACCCCGTGGAAGA
TTTTAA

InterProScan

PANTHER
LSm4/Sm_D1/D3 (IPR027141) - T[1-103] 1.3E-48
CDD
Sm_D1 (IPR034102) - T[2-86] 1.4849E-58
SUPERFAMILY
LSM_dom_sf (IPR010920) - T[5-118] 8.18E-27
Pfam
LSM_dom_euk/arc (IPR001163) - T[5-69] 3.6E-19
SMART
LSM_dom_euk/arc (IPR001163) - T[5-70] 1.2E-17

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SMD1_HUMAN 83.696 % 163 1.73E-53