- Transcript 'Haaura.CG.MTP2014.S4...' >
- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'Haaura.CG.MTP2014.S4...' >
- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'Harore.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S28.g04607.01.t
Possible name(s)
MID1; TRIM36; TRIM46
Gene model
Location
S28 [341,296 / 352,063]
Amino acid sequence
Length: 1,181
>Harore.CG.MTP2014.S28.g04607.01.p
MLSTENNLSNANLRIHSLTMVDSETMSCGSTTASDITEDSQQTMENYGHLLLCPVCKEII
THPVLLPCQHSVCYGCARSQIIAAEARDPSFQGDTPLTPSRNVTPTALGNSTRMRRPLGT
SPSASSILSSSSSKRDSGIETSPSITPCLTKGFSFMSTSSFSSIGSTETCLLRASDHDDV
SLNSDVSARSRDESKETKLRNEQSRRMISNCYSPRRNYTARQPFNDHGNLVAKSDNSESP
STPESVQKVSRNESDSNGSSVVYVTKDLVHFEACCVNESSDDFLVKGRVNTDNHSPIPTE
KIGNQNGNMCKTPNSRGMKQKQKSTGKLPRQKSTGKISGKKSFNSKSSVSSPVSPSDIAS
ENLSRFCTPPPPMSKGSAARNCSQTTSGGLRRSLSTSTIIRSTTMRQQHGADVLKRSRVK
SLFCPTCETDIELGKLGIKGLFRNFALEAIVERFRNAAKAAVAIRCGYCKPPASDATKSC
LDCKLSYCNECYKTVHVWGTKKAQHEFVGPTNNFSRPKVMLCPEHNLEAVNMYCNRCQRS
VCRACKSRGGAHANHSVTSVKNAYKDSKDRLFKSLDILKAKKESTDGAIAQLENDIKAFE
LEETSVRDEIHSTIDELHKLLEVKRTELLEKADQYARCKENAMRRDLQGLKNNLMYSSVM
AFVEEVLLETDPAYFLQTIKMVESRVNEAINHLSILPATSSNEEDVWKSWMRTEECDDVR
SMLKLYMNAAPAVKSIEELDFLLSPGVPSIDTPHAAFSTSNSVTLGGNSNSYRWRLNDKS
DCAEFYQINYWSSNGGFQENTECHHMPGKVFSIPNNSKLLHQSGNVDVQIRAVNKAGVGQ
WSDRSIVSSNFIRRANFFWTPTSENYLLKVTDDGKTVKVNEKECLEPFGTDFQFLSGNIE
LEGGRHYFEVEACGTAEFQFAIGVADLKRKYSPCLHGTVDFCEVLTPESSAMLYCGPKDC
YVVNCSGRELGSLPRGRLTFTQSYVVGNGKEKQKTSAFSSLKPLKQLKNTILRRGSKPVH
DEKSFVSCHFRSIADGRYGLAPSIELARSSSVTSLPSMLRSQSPVSMESGTDYGQPQSQW
NMRAQIGRRCFRIGVEIIAADGNQTEVRFYDVYSQSNLLFTKTITTEYPVNPVLAVYGEG
HVSLTLFSLRSHSNLYQICCIFYMIYSFDLVIDSYDFLFLC
Nucleotide sequence
Length: 4,020
>Harore.CG.MTP2014.S28.g04607.01.t
AAGTTAGCTTGATAGCATATATAGAAAATATCAGGATTTGTGATATATTTTGCAAATCAA
ATACTCCATTGCTATGCTTAGCACTGAGAACAATCTCTCTAACGCGAACTTGCGGATACA
TTCTTTGACGATGGTCGACAGTGAAACCATGTCATGCGGTTCAACAACAGCTTCTGATAT
AACCGAAGATTCACAACAAACGATGGAAAACTACGGGCACCTCTTGCTATGTCCGGTTTG
CAAAGAGATTATCACACATCCGGTCCTCCTACCATGCCAACACAGCGTTTGCTACGGATG
TGCGAGGTCGCAAATCATAGCAGCCGAAGCAAGAGATCCATCTTTCCAAGGTGACACTCC
GCTAACACCCAGTCGTAATGTCACACCCACTGCATTGGGAAATTCGACAAGAATGCGCCG
ACCTCTCGGTACGTCGCCATCAGCCTCTTCCATATTATCATCGTCTTCGTCAAAACGAGA
CAGCGGAATCGAAACATCACCATCTATTACTCCTTGTTTGACGAAAGGATTCTCGTTTAT
GTCAACTTCATCTTTTTCTTCGATTGGCTCAACCGAAACTTGTCTCCTGCGTGCGTCAGA
TCACGATGACGTATCTCTTAATAGCGATGTATCTGCAAGAAGCAGAGACGAGAGCAAAGA
AACGAAATTGCGAAATGAGCAATCTCGACGGATGATATCGAACTGTTATTCGCCTCGTCG
CAACTATACCGCTAGACAACCGTTCAATGACCATGGTAATCTCGTAGCTAAATCGGATAA
TTCAGAATCTCCTAGTACACCGGAATCCGTACAAAAGGTTTCAAGAAATGAATCTGACAG
TAACGGTTCTTCGGTGGTATACGTCACAAAAGATCTCGTACATTTCGAGGCTTGTTGCGT
CAATGAAAGCAGCGATGATTTCCTTGTAAAAGGAAGAGTGAACACTGATAATCATTCACC
TATACCAACAGAGAAAATTGGCAACCAAAATGGGAACATGTGCAAAACACCAAATTCAAG
AGGAATGAAACAAAAACAGAAATCTACCGGCAAACTTCCTCGACAAAAATCAACTGGAAA
GATATCGGGAAAGAAGTCATTCAATTCGAAAAGTTCCGTTTCTAGTCCAGTATCGCCGTC
TGATATAGCTAGCGAAAATCTATCGAGATTCTGTACGCCGCCACCGCCTATGAGCAAAGG
ATCCGCTGCGCGTAATTGCTCTCAGACGACATCTGGTGGATTGCGTCGTAGTCTTTCGAC
TTCTACTATTATTAGGTCAACCACAATGCGTCAACAGCACGGAGCCGATGTCTTGAAACG
TAGTAGGGTGAAATCCCTTTTCTGTCCAACCTGTGAGACCGATATTGAATTGGGAAAGCT
GGGAATCAAAGGACTTTTTCGAAATTTTGCACTTGAAGCGATCGTCGAGCGTTTTCGAAA
CGCTGCCAAAGCTGCGGTCGCAATTCGTTGCGGTTATTGTAAACCTCCAGCGTCGGACGC
TACAAAATCTTGTTTAGATTGTAAGTTGAGTTATTGCAACGAGTGTTACAAAACCGTGCA
TGTCTGGGGAACGAAGAAAGCGCAGCATGAATTTGTTGGACCGACAAATAACTTTTCCCG
GCCCAAGGTTATGCTCTGTCCAGAACATAATTTGGAGGCTGTGAACATGTACTGCAATCG
ATGTCAGAGATCCGTTTGCCGAGCGTGTAAATCACGAGGTGGTGCTCACGCAAATCATTC
GGTAACCTCGGTTAAAAACGCTTACAAAGATAGCAAAGATCGGTTATTTAAATCGCTCGA
TATATTGAAAGCTAAAAAAGAATCTACGGATGGTGCAATTGCTCAACTTGAAAATGATAT
CAAGGCATTCGAGCTAGAAGAAACTTCTGTTCGAGATGAAATTCACAGCACAATTGACGA
GCTACATAAACTACTCGAAGTAAAAAGAACAGAACTACTGGAAAAAGCTGACCAGTATGC
TCGATGCAAAGAAAATGCTATGAGACGGGATCTCCAAGGATTAAAGAACAACTTGATGTA
CTCTAGTGTTATGGCCTTTGTTGAAGAAGTTCTTCTTGAGACAGATCCCGCATACTTCCT
GCAAACTATAAAAATGGTGGAGTCGCGGGTTAACGAAGCTATCAATCATCTTTCGATTTT
ACCGGCAACATCATCGAACGAAGAAGACGTTTGGAAATCGTGGATGAGAACAGAAGAATG
CGATGATGTACGATCGATGCTCAAACTTTATATGAACGCTGCGCCAGCTGTAAAATCTAT
AGAAGAATTAGATTTTCTACTAAGTCCTGGCGTTCCCAGTATTGATACACCGCATGCTGC
ATTTTCTACGTCGAACTCCGTGACGCTTGGGGGAAATAGTAACTCCTATAGATGGAGACT
AAACGATAAGTCGGATTGTGCCGAATTTTACCAAATTAATTACTGGTCAAGTAACGGAGG
TTTTCAAGAAAACACAGAATGTCATCATATGCCAGGCAAAGTATTTTCTATTCCTAATAA
CAGCAAGTTGCTGCATCAAAGTGGAAACGTTGACGTTCAAATCCGAGCAGTGAACAAGGC
CGGTGTCGGACAATGGAGTGATAGAAGCATCGTGTCATCGAATTTCATACGGCGGGCCAA
CTTCTTCTGGACTCCAACGAGCGAGAATTACTTACTCAAGGTTACAGATGATGGAAAAAC
TGTGAAAGTTAATGAAAAGGAATGTTTAGAACCTTTCGGAACAGATTTTCAATTTTTGTC
AGGAAACATTGAATTGGAAGGAGGCAGGCATTATTTTGAAGTCGAGGCGTGTGGAACGGC
TGAATTCCAGTTTGCTATCGGCGTAGCAGATCTGAAGAGAAAATATTCGCCCTGTTTGCA
TGGAACAGTCGATTTTTGTGAAGTTCTGACTCCGGAAAGCTCTGCAATGCTGTATTGTGG
TCCCAAAGACTGCTACGTGGTGAACTGTTCTGGAAGGGAGCTGGGAAGTTTACCTCGAGG
CAGACTAACCTTCACGCAATCCTACGTAGTTGGAAATGGGAAAGAAAAGCAGAAAACTTC
TGCATTTTCTTCTCTTAAACCGCTGAAACAATTAAAAAATACGATTTTGCGACGAGGTAG
TAAGCCTGTTCACGACGAGAAGAGCTTTGTCAGTTGCCATTTCCGAAGTATAGCAGACGG
ACGTTATGGGTTGGCTCCATCCATAGAGTTGGCTCGTTCTTCGTCAGTTACATCACTGCC
GTCGATGCTGCGTTCCCAGTCGCCTGTTTCGATGGAGAGTGGCACAGATTACGGTCAGCC
ACAGTCGCAATGGAACATGAGGGCTCAAATCGGCCGGCGTTGCTTTAGAATTGGAGTCGA
AATTATAGCTGCAGATGGCAATCAAACCGAGGTTCGTTTTTACGACGTCTATTCGCAATC
AAACCTTCTCTTCACTAAAACTATAACCACAGAATACCCTGTTAATCCAGTCTTGGCCGT
ATATGGAGAAGGCCATGTTTCGTTGACTTTATTTTCCTTACGATCCCATTCGAATCTGTA
TCAAATATGCTGTATTTTCTATATGATTTATTCATTTGATCTGGTGATCGACAGCTATGA
CTTTCTATTTCTATGCTAAATCATGCGTGACCACAGACGATAGATTTATTAAGGAAATTT
TTCATTCTCACTTCGGTGAAAGGGGGTGTTGAAAACCTATTCTTTATCCTTGCCGACCAA
ACACGATAATTTTGTTTGCATAGCTTCGCACGGATTTTTCTCTTAAGCATTATCCATTGC
ACGGCGTTTTTTGAATATAAATCTCTACACTGAACCCATGAGTGGTGTTTATAAAATGGC
GAAATCGATTCTTCAGTTCACAGTTTCGAACCAGATTGATGCAGAATCGGTAAAAAAAAT
CCCCCGACTGACGTATCTGCACTTAGGCTCGCATTCTTATGTGGACTTTTCAATGTAAAT
TTGGAAAGAAATAGTTTACGCTATGATAATTGTGAATAGAAAGAAGAATATTTGGCGCCA
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[32-92] 2.6E-9 |
| SMART |
Znf_RING (IPR001841) - T[53-151] 2.0E-4 |
| Pfam |
Znf-RING_LisH (IPR027370) - T[53-78] 6.1E-7 |
| SMART |
Znf_B-box (IPR000315) - T[461-510] 4.0 - T[517-560] 2.2E-5 |
| ProSiteProfiles |
Znf_B-box (IPR000315) - T[517-560] 11.263 |
| Pfam |
Znf_B-box (IPR000315) - T[518-559] 5.4E-8 |
| CDD |
Znf_B-box (IPR000315) - T[521-560] 6.65872E-5 |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[852-928] 5.94E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TRI18_HUMAN | 25.678 % | 137 | 4.76E-33 |
| TRI36_HUMAN | 44.17 % | 256 | 1.91E-72 |
| TRI46_HUMAN | 30.642 % | 234 | 8.34E-65 |