- Transcript 'Harore.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S27.g00013.01.t
Possible name(s)
COP1; TAF5L; WDR5B
Gene model
Location
S27 [369,423 / 371,358]
Amino acid sequence
Length: 644
>Harore.CG.MTP2014.S27.g00013.01.p
MKRNSGREPTPSANSHAPSVLGSFREMNEDFLCPICFNLINEAYMTQCGHTFCYACLIQS
LKESNKCTKCNALIEKSDDIYPNFTLNDLIKKQKKKIEDLTAASKRMKMDSRLWEWQAFI
ASEEDDLLLSDLDQMLKTLQEKRRKIIQDNTVVHNQILLEFLQDLSKRKKSMLDRVRAEL
AVVEQDIVHVQEALEENKKVTVGIMQESVVPDNVKSETEGTEKKEQLVPKPSTSSATIAT
TSVKKETFNSTSAICKENQSWFFKTLSRRRRKLSRHFDDLNDCYFNTRLGVLAPSEEKSV
ELLGEFSKSLRQFTQFSSVRPVASLSYASDVLNSSNIVSSIEYDKDCDHFAVAGVTKKIK
VYDYESVVNNVIDGINYPVVQMACNSKISCLSWSKYHKTWLASSDYDGSVTLWDAFGGKK
IHVFQEHEKRCWSVDFNTLDLRLLASGSDDAHVKLWSTNTPHSVACIEAKANVCCVKFNP
CSSYHLVFGCADHFVHYYDIRKPNESLGVFKGHKKAVSYAQFLSKDEIVSASTDSELKLW
NINNPNCIPVRSFCGHTNEKNFVGLATDGTYIACGSENNSLYVYFRGLSNPLLTYKFDVV
KSVLDRDNREDDSNEFVSAVVWRENSNILTAANSQGTIKILELI
Nucleotide sequence
Length: 1,935
>Harore.CG.MTP2014.S27.g00013.01.t
ATGAAAAGAAATTCTGGGAGAGAACCTACTCCTTCTGCGAATTCGCACGCACCATCAGTC
TTGGGATCTTTTCGGGAGATGAATGAGGATTTTTTGTGTCCCATTTGCTTCAATCTAATC
AACGAGGCCTACATGACTCAATGCGGTCATACCTTCTGCTATGCGTGTTTAATACAGAGT
TTGAAAGAAAGCAACAAATGTACGAAATGCAACGCGTTGATTGAAAAAAGTGACGACATC
TATCCCAACTTTACCCTGAATGATTTGATAAAAAAACAGAAGAAAAAAATTGAAGATTTG
ACAGCAGCCTCAAAAAGAATGAAGATGGATTCTCGTTTGTGGGAGTGGCAAGCCTTTATT
GCTAGTGAGGAAGACGACTTGTTGCTCTCAGATCTTGACCAAATGCTCAAGACTCTGCAG
GAAAAACGGCGTAAAATAATCCAAGATAATACCGTAGTACACAACCAGATTCTATTAGAA
TTCCTACAGGATCTCAGCAAAAGAAAAAAGTCCATGCTGGACCGTGTAAGAGCAGAGCTT
GCGGTGGTGGAACAAGACATAGTTCATGTGCAAGAAGCTCTTGAAGAGAATAAAAAAGTG
ACTGTTGGGATCATGCAAGAATCTGTAGTACCAGACAATGTGAAGTCAGAGACTGAGGGC
ACAGAAAAGAAAGAACAATTGGTGCCAAAGCCTTCAACATCATCTGCCACCATCGCAACA
ACTTCAGTTAAAAAAGAAACATTCAACAGCACTTCTGCTATATGCAAAGAAAACCAAAGT
TGGTTCTTTAAAACTCTTTCCAGAAGACGAAGAAAACTTTCGAGGCATTTTGACGATTTG
AATGACTGTTATTTTAACACTAGACTAGGTGTGCTAGCGCCCAGTGAAGAGAAGAGCGTC
GAACTGCTCGGAGAATTTAGTAAAAGCCTGCGTCAGTTCACTCAATTTTCGTCCGTTCGA
CCCGTAGCATCGCTGAGCTATGCGAGTGATGTACTAAATTCATCAAACATTGTCTCGAGC
ATTGAGTATGATAAAGACTGCGATCACTTTGCCGTAGCAGGGGTCACAAAGAAAATTAAA
GTCTATGATTATGAATCCGTGGTTAATAATGTCATAGATGGAATTAATTATCCGGTGGTT
CAAATGGCTTGCAATTCGAAAATATCGTGCCTAAGCTGGAGCAAGTATCATAAAACGTGG
TTGGCCAGCAGCGATTACGACGGCTCAGTAACTTTATGGGATGCGTTTGGCGGTAAAAAA
ATTCATGTGTTCCAGGAGCATGAAAAAAGATGTTGGAGCGTGGATTTTAACACTCTCGAC
CTGCGACTACTAGCATCCGGCTCAGATGACGCTCATGTTAAATTGTGGTCGACGAACACT
CCCCATTCGGTTGCTTGTATCGAAGCTAAAGCCAATGTGTGTTGCGTCAAATTCAACCCA
TGCTCAAGCTACCATCTAGTGTTTGGGTGCGCCGACCATTTCGTCCATTATTACGATATC
AGAAAGCCTAACGAATCCCTCGGAGTGTTCAAAGGACACAAGAAAGCGGTCTCCTACGCT
CAGTTTTTATCAAAGGACGAAATTGTTTCTGCTTCGACAGACAGTGAGTTGAAGTTGTGG
AACATCAACAATCCCAATTGCATCCCCGTGCGATCCTTCTGCGGACACACAAATGAAAAA
AACTTTGTGGGTTTGGCCACTGACGGCACCTACATCGCTTGCGGCAGTGAAAACAATTCT
CTTTATGTGTATTTCAGAGGTTTGTCTAATCCACTGCTGACTTACAAGTTTGATGTTGTG
AAAAGCGTACTGGATCGTGATAATAGAGAGGATGACAGTAATGAATTTGTCAGCGCTGTT
GTGTGGAGAGAGAACAGTAACATATTGACTGCTGCCAACAGTCAGGGCACAATAAAAATT
TTAGAGCTAATATAA
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[11-122] 2.0E-18 |
| SMART |
Znf_RING (IPR001841) - T[33-70] 1.4E-4 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[33-71] 11.206 |
| ProSitePatterns |
Znf_RING_CS (IPR017907) - T[48-57] . |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[305-644] 4.9E-127 |
| SMART |
WD40_repeat (IPR001680) - T[318-363] 2.0 - T[375-414] 0.032 - T[417-457] 1.2E-6 - T[460-499] 0.19 - T[503-541] 5.1E-4 - T[546-585] 1.4 - T[601-642] 280.0 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[331-644] 23.15 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[334-642] 3.53E-53 |
| Pfam |
WD40_repeat (IPR001680) - T[387-414] 0.11 - T[418-457] 0.0029 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[401-415] . - T[528-542] . |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[401-415] 1.9E-5 - T[444-458] 1.9E-5 - T[528-542] 1.9E-5 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[424-466] 9.64 - T[510-550] 10.809 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COP1_HUMAN | 52.821 % | 688 | 0 |
