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TRANSCRIPT CARD

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  1. Transcript 'Moocci.CG.ELv1_2.S53...'
  2. Transcript 'Harore.CG.MTP2014.S1...'
  3. Transcript 'Cisavi.CG.ENS81.R234...'
  4. Transcript 'Cisavi.CG.ENS81.R1.3...'
  5. Transcript 'Harore.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S261.g13468.01.t

Possible name(s)

SGSM1; SGSM2; TBC1D15

Location

S261 [30,285 / 48,887]

Sequences

Amino acid sequence

Length: 1,116

>Harore.CG.MTP2014.S261.g13468.01.p
MNCQMLDVALVKSCFKLFLAAEFHESLLRTVKRQVKAIMEEAVTKKFVHEESEHLLRLSA
TIQTCLLDQLKKRTAGFLRSNKIANLFNKVKKSIPEVQQLITKIEETEASYESQLADIEK
GINGTKSQCMYVRQLKHVWVRLALTEKLLAKMVQHLVDNSSKYYEKNAIMADRVCGQLIS
SLLVGPCALEYTKMKTSDHYWSDPPADELLQRHKLHSRTQSPGSPGRRPALHAAAKYGAF
DSGDKNPANANSIDSSFRDYVESLHQNSKSTLLYGKNNVVVQPREEINPIPGYLSLHQIA
DSLHVKWTPNQLMHSGESNTKDINCNRQGSTDQQSPDIDGTRSYQIPNGISYLHAGRKFY
KNKNENNKARSPVSYWEYAMSVNVCDIVYLHCHQRSDSGGTLVLVGQDGVQRPPICFPPG
GHLLAFLTCLETGLLPHGHLDPPLWAQHGKGKVFPRLRNRSSRSSSSSGSQSEVGEEVTD
FVFRVTTGTSISSYLPSHIDLNPIQDNFNAYATNSSLYLSQGSDYSIKSRSRSSLKVLCD
TMRRQIISRAFYGWLAHCRHLSTVRTHLSALVISDQCPIPSEPVAPIDEATWNEFIKSGR
IEDKTELMRHVYFGGVQHSSRKIVWPFLLNHYPLESSPEERVRIDREIEMEFKTVMSDWM
AVEKIVKQKEKEIQAAHLAKLSCDSVTSSISSFDGQPQFPSAVLRKQSTVNDVFASTETD
CSFVLPIDEEVDGDNDIQENGGVVHGKEERIDRNRKENRSLTKKALNTARRHSDHTPYSS
ISTEPSLLDRRSSNITNPLGESLEDLRLDNILETDGNCSIGEKNGIDQDYIKEEKVQTRR
LQKQTVIDIEGNMDKVKEAVITNGDLHDNNNQPEVDDSSAESQKSGATSYSPELLDSFGL
NLHRIEKDVHRCDRNHSYFAEPKNLNKLCNVMCSYVWNHLEVGYMQGMCDLAAPLLIIMD
DECRVYSCFTQLMKRMVNNFPNGGAMDSHFANMRSLIQILDSELFERTVHQNGDYTHFYF
CYRWFLLDFKRELSYEEDVFAVWERIWAARHVSSDHFVLFFALALLHTYRDIILNNDMVF
TDIIKFFNEMAERHDAKKILKLAQNFVFEVQSLISK

Nucleotide sequence

Length: 6,437

>Harore.CG.MTP2014.S261.g13468.01.t
TATTTAGTATAATTCTCCTCAATTTAACACCTAGCTTAATCAAAGCTATGTTGATCTGTT
GATTTACATTGCTTGGTGAATTTGTTTACAAGACTTCAGGGGAAATTTGAATTTTGTTAC
TGAATAAACGTGCTGCTGCTCAATAACCTCAATAACTCAACTAATCCGAGGCACTTTACA
ATCATGGGCAGTATTGATGAATTGTCAGATGCTCGATGTCGCACTTGTCAAATCATGTTT
CAAACTTTTTTTAGCGGCTGAATTCCATGAATCTCTGCTCAGAACAGTCAAACGTCAAGT
GAAGGCTATCATGGAAGAAGCAGTGACAAAAAAATTTGTACATGAAGAAAGTGAACATTT
ACTTCGACTCAGTGCGACAATTCAGACATGTCTGCTGGACCAATTGAAAAAGAGGACTGC
CGGCTTCTTACGGAGTAACAAGATCGCGAATTTGTTCAATAAGGTTAAGAAATCAATTCC
AGAAGTCCAGCAATTAATCACGAAAATTGAAGAAACTGAAGCTTCCTACGAGAGCCAACT
GGCAGACATCGAGAAAGGAATAAACGGTACAAAATCCCAGTGTATGTATGTACGGCAATT
AAAACATGTGTGGGTTCGTCTGGCCCTCACAGAAAAACTTCTTGCGAAAATGGTTCAACA
CTTGGTTGACAATAGCAGTAAATATTATGAGAAGAATGCTATCATGGCCGACCGTGTATG
TGGACAGTTAATTTCTTCATTGCTTGTTGGCCCTTGTGCTCTCGAGTACACGAAAATGAA
AACCTCTGATCACTATTGGTCAGACCCGCCAGCTGACGAGCTTCTCCAAAGACACAAGTT
ACACAGCAGAACCCAATCTCCAGGATCGCCCGGTCGTAGACCAGCTCTCCATGCTGCAGC
TAAATACGGAGCGTTTGATTCTGGCGATAAAAATCCTGCGAACGCGAACAGCATCGATTC
ATCTTTTCGCGATTATGTGGAATCGCTTCACCAGAACTCAAAATCCACTTTACTCTACGG
CAAAAATAATGTGGTTGTCCAGCCGAGAGAGGAAATCAACCCAATACCAGGCTATTTATC
TCTTCATCAAATCGCCGATTCATTACATGTAAAATGGACGCCCAATCAACTGATGCACAG
TGGTGAAAGTAACACGAAAGACATCAACTGCAATAGGCAAGGCAGCACTGACCAGCAAAG
TCCTGACATTGATGGTACAAGATCATATCAAATACCGAACGGAATCTCCTACTTGCATGC
TGGTAGAAAATTTTATAAAAACAAGAATGAAAACAACAAAGCAAGAAGTCCAGTGTCCTA
TTGGGAATATGCCATGAGTGTCAATGTCTGTGACATTGTGTACCTTCATTGTCATCAGAG
AAGTGACAGTGGAGGAACACTGGTACTGGTCGGACAAGATGGAGTTCAACGTCCACCAAT
ATGTTTTCCTCCGGGCGGGCACCTTCTTGCATTTCTGACTTGTCTCGAGACTGGACTTCT
GCCTCATGGTCATCTTGATCCTCCTCTTTGGGCTCAGCATGGAAAAGGTAAAGTTTTTCC
AAGATTGAGAAACCGCTCTTCCAGATCAAGTTCAAGTAGCGGAAGTCAGTCAGAAGTGGG
AGAAGAAGTTACAGATTTCGTATTCCGTGTTACAACTGGGACTTCCATCTCCAGCTATCT
CCCATCCCACATCGACTTAAATCCTATTCAAGATAATTTTAATGCATACGCCACAAACTC
CAGCCTCTACCTATCTCAAGGCTCTGACTACAGCATAAAGTCTCGATCGAGATCATCTCT
AAAAGTTCTCTGCGATACAATGCGAAGACAGATCATATCTCGGGCGTTCTACGGCTGGCT
TGCTCACTGCCGCCACCTCTCAACGGTACGGACGCATCTGTCAGCTCTAGTAATTTCGGA
CCAGTGTCCCATTCCTTCAGAGCCAGTCGCACCTATTGATGAAGCCACATGGAATGAATT
TATCAAAAGCGGCAGGATAGAAGATAAGACAGAGCTCATGCGTCATGTGTACTTTGGAGG
CGTCCAGCATTCGTCAAGAAAAATTGTGTGGCCATTCTTACTTAATCACTATCCGCTTGA
GAGTTCTCCCGAAGAGAGGGTTCGTATCGATAGAGAAATTGAAATGGAATTCAAGACTGT
CATGTCCGACTGGATGGCTGTTGAAAAAATTGTCAAACAGAAAGAGAAAGAGATACAAGC
AGCTCATCTGGCAAAACTATCATGTGATAGTGTAACAAGCTCTATATCTAGTTTTGATGG
ACAACCACAGTTCCCATCTGCTGTGCTCAGAAAACAATCCACTGTCAATGATGTCTTTGC
CTCCACAGAGACAGACTGTTCTTTTGTGCTTCCTATAGATGAGGAGGTGGATGGAGATAA
TGATATTCAAGAGAATGGTGGTGTTGTTCATGGGAAGGAAGAAAGAATTGATAGAAATAG
AAAAGAAAACAGATCACTCACAAAGAAAGCATTAAACACGGCAAGAAGGCACAGCGATCA
CACTCCATATTCATCAATAAGTACTGAACCTTCACTTCTGGATAGAAGATCTTCAAATAT
TACGAATCCCCTTGGAGAAAGTTTGGAAGATCTGAGACTAGACAACATCCTTGAAACCGA
CGGCAACTGCTCTATAGGTGAAAAAAACGGCATAGATCAAGACTATATCAAAGAAGAAAA
GGTCCAAACGAGACGTTTACAAAAACAAACTGTGATTGATATCGAAGGAAATATGGATAA
AGTAAAAGAAGCCGTAATTACCAATGGAGATCTCCATGACAATAACAATCAACCTGAGGT
TGATGATTCTTCTGCTGAATCTCAGAAATCTGGTGCTACTTCCTACTCTCCTGAGCTCCT
TGATAGCTTTGGACTCAACCTGCATAGAATTGAAAAAGACGTTCATAGATGTGATAGGAA
CCACAGCTACTTTGCTGAACCTAAAAATCTGAATAAACTTTGCAACGTCATGTGCAGTTA
TGTGTGGAACCATTTGGAAGTTGGCTATATGCAGGGCATGTGTGACCTAGCAGCGCCATT
ACTTATCATCATGGATGATGAGTGTCGTGTCTACAGTTGCTTTACTCAGTTGATGAAGCG
AATGGTCAATAACTTTCCTAACGGCGGAGCTATGGACTCGCACTTTGCTAACATGCGTTC
ATTAATTCAAATTCTCGATTCAGAACTCTTTGAGCGAACCGTTCATCAGAATGGTGACTA
CACTCACTTTTATTTTTGCTATCGCTGGTTTTTGCTCGATTTCAAGCGAGAATTATCTTA
TGAGGAAGATGTTTTTGCTGTCTGGGAGAGGATCTGGGCAGCTCGTCATGTATCCTCCGA
TCATTTTGTTCTTTTCTTCGCTCTCGCACTTTTACATACATATCGTGATATCATACTTAA
CAACGACATGGTATTCACTGATATTATCAAGTTTTTCAATGAAATGGCAGAACGTCACGA
CGCCAAAAAGATTCTCAAACTTGCCCAGAACTTTGTTTTCGAGGTACAAAGTTTGATTTC
AAAATGATGAAGAGAAAAAGGAGATTGTCAGTGACTGAAGTCTCTTGATGAAAATTGGTA
TGTAAACTGTTTAGCTTCAATGATCATTGGTATTTTCTTTACTGAACCAACAAACAACAA
ACCTTTCTAAAAGTTATATATTAGATATGAAGATATAGAATTTTATTAGTCAGAAATTAA
CTACTTGTAGATTTTTCTAAATACAGTTAATTGTAAAATACTTTTGTTATATGTCATGTT
TTGTAAATTTAATCCAGTTATCGGAACTTTTTCAGTGCAATTTGCAACACTAAAATGCAG
TTTATTAAAGAGATTTTTGACAATTTTTACTCTTTTTCCAAGTTCAACAACAGCTCCTGA
ACTAAAAGGAGAATTATATCTTCATCTTTTTTGTATGTTATCTGAATTTAGCTTAGAACT
TTAATTAATTTCAAAAAAGGGATGTATTTTATCTTTTGAAAAATATGTAAATAACATCTA
CCTAGAAACATTTATATATATATATATCAACAGATATCTATTTTATATCTACTTGTTGAG
TGCAATGTTGATGTTATATCCATTCTTTACAATTTATTGAGTAGAAACATTGTTATCACC
TTCTGTGGAAGTAGTTAATCTTGTTGCTTCAGAAGATTATGATACGTATTTGTAACAATA
ATTATGTTATAGCACTTCACGTTCAAGTTAGCTGCTGGCACACAGGTTTGATAATAAGAA
TTTGATCCCACTAACTTGCCAGTTTACTAGCAACTTACATTATTGTTACATACCTAGATC
TACTTCCCTTATTCTGTTCCTAACTTGCTCACATCATAATATTCTACAATTATTGTAGTG
TCATTCCTTCCCTCAATCTGCCATTTCCAAATCATTCTAGTGAATGTGGAATGCCTACTC
ATTGCAGTCATACAGCATAGTTTATAGCGTTCTCTCTACTTAAAACCTTTATTGCTAGTT
ACACGGCATACAAGAAATAATTTCACGGCATATAACAAATAATTTTTTAGCAGTTGTTAG
TCTGTAACTTATTTGCACATTTTCCCAACCTGCACATGTTATATTTAACGTTTGATAGCA
CATTTAAATGGGTAAGTTTTGTCTTTGCACTGGTCTGACCACTATGCTTTGGTGTAACTC
GCACTTACATCTGCGTGTTGAAATGAAGTCGTCTTTTGTGTTTTGATCTTTATGTTCTAT
TGCTAAAAATAAAAGCAAACACGGAAGGTACTATTATATTTTATGGCCTTTTAATGCAAA
CATGTAAACATCATTTTTCCGATTATGACGAAGTTCAGAAGAATAAAGAATTTATTGGAA
TCAAGAATTGCGATGGGAAGATTGCAAAACAGTGAATGCGGCGAAGCACATTTTGGCAAA
TATAGTTAAGGGAGTTGTCTGCAAGCAGACGAAGATTCATTAGAACGTCGTACTGTTTTG
CATTGTACTATACGAGTAGATTATGAGGAACGTCTTTGATTACATATGTAAAAGTCCAAA
AGAATATTTTTAAAATGTCACACATTGAAAATTTCTAACGCCATGTGTATTTCACATCGC
GCGTGTTTATTGCGACTTAACAGCCAAACGATGAGCGACGCCCTGTGTAGTTGCGTTAAC
GGTTAATACCCCGAAAGTTGACCCGTGTCTGAATTTATACGAAGGGACGTAACCCATATA
TTTGGGTAAGACTCCTTCATGCTTATGATATATGACGCCATCGTTACGTGTTAACATGCG
GTCATGGTCAAATGAGTCCGGCCTCTTCCGTTCTTTCGGCGTATTGAACTTAGTCGTTTG
GTCAGGCCACGTGTACCAAAAACTGGACCCGTAAAGCGTTTGCGGGTATCCTGTTGGATG
TTTCGAAACTATCTGAGGAGTGCTCTTTCTCAAGGATGGTACGGAATCTCTGCTTCTGGA
TGAGGAAGCAGTGGTTGGGGCTTTGGGAGGTTCATCTTTACCGCTCTCAAACCTGGGACG
TACATACTCAGGTCTGGCTGTAACAGGCCGAGAGCGTAGTTGTCGAAGTGCTGAAGCACT
ACCCGCTGACATCATAGATATATGCGACGGAACTGGACTTGGTGTATAATTGTAAGCCTC
ATCGTTGCCTAGCACGGTCTGTCCATTTTTATGTCGCGTTGAAGTAACAGGTGCCGACTT
AGCTCGTCCCTGACCCTTCCCGTTTTCTGGCGTGGCACCAGAGTTTTTTAGTGGCGAAAA
CTTTTTTTCTTCTTTCACTGGGATGGGTATTTCGTCTTCCTCCTCCGGCCTAAAAAACTG
TTTCGATCTAGAGCGATAGCCCGTTGCTGTAGTCGGTTTCATTGGGCTACTGATGCACCG
AACCAACGACCTTATGACCCGTAGTTCGTTGATGCTCCCACGGTAGGAAGGGACATGTCC
ACTAAAACCGATGACTGGTTCTGGGTTACTTTCAGCTTTGATTGGTTCATCTCCGTATTT
CTTGATATATTTTTCATTTTGTTTCCGAAGAAATTCAGTGTAGTTGAAGTTTAAACTTGG
CATATTGCGGACAGACGTTCCTTAGTAGGGCTAATGCTTTAGAAGTTCATTTGGTTATTC
TGTATCAGAGTTATTACGATGCCTGTCCAAGCTGTTACGATGGAAGCTAATTTACAAAAT
ACGGGTTAGTTTCCTACTACAGTATCCTTACTGAACTTGTGTCCATGTATTCCTTCGCTA
TTAAATTAGTTTGGCTAGCTGATCCTTCGTGACATTCATGTTATTAGTTTAGTGCCTTTG
AACCTAGTTGTCTACCATTGATTTTAGATCCCCGCTCTTAAGACCTAGTAAGCATTGCAA
TATGATTCTTGACGTAGTTTTTATCGTTCGCTTCCTCAGTAAAACCTCCAAAGCTTTTAA
TGAGACAATGACACAAC

InterProScan

SUPERFAMILY
Run_dom_sf (IPR037213) - T[21-207] 8.37E-25
ProSiteProfiles
Run_dom (IPR004012) - T[49-199] 18.361
Pfam
Run_dom (IPR004012) - T[58-196] 2.8E-25
SMART
Run_dom (IPR004012) - T[136-196] 1.4E-13
CDD
SGSM1/2 (IPR037745) - T[270-487] 4.75278E-75
SUPERFAMILY
Rab-GTPase_TBC_sf (IPR035969) - T[592-654] 2.3E-40 - T[888-1005] 2.3E-40 - T[984-1105] 7.06E-21
SMART
Rab-GTPase-TBC_dom (IPR000195) - T[612-1077] 3.5E-28
ProSiteProfiles
Rab-GTPase-TBC_dom (IPR000195) - T[615-1050] 26.471
Pfam
Rab-GTPase-TBC_dom (IPR000195) - T[876-1073] 4.1E-34

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SGSM1_HUMAN 44.251 % 915 0
SGSM2_HUMAN 42.857 % 550 7.76E-179
TBC15_HUMAN 31.579 % 119 2.23E-27