- Transcript 'Phfumi.CG.MTP2014.S2...' >
- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'Haaura.CG.MTP2014.S1...' >
- Transcript 'Harore.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S261.g13468.01.t
Possible name(s)
SGSM1; SGSM2; TBC1D15
Gene model
Location
S261 [30,285 / 48,887]
Amino acid sequence
Length: 1,116
>Harore.CG.MTP2014.S261.g13468.01.p
MNCQMLDVALVKSCFKLFLAAEFHESLLRTVKRQVKAIMEEAVTKKFVHEESEHLLRLSA
TIQTCLLDQLKKRTAGFLRSNKIANLFNKVKKSIPEVQQLITKIEETEASYESQLADIEK
GINGTKSQCMYVRQLKHVWVRLALTEKLLAKMVQHLVDNSSKYYEKNAIMADRVCGQLIS
SLLVGPCALEYTKMKTSDHYWSDPPADELLQRHKLHSRTQSPGSPGRRPALHAAAKYGAF
DSGDKNPANANSIDSSFRDYVESLHQNSKSTLLYGKNNVVVQPREEINPIPGYLSLHQIA
DSLHVKWTPNQLMHSGESNTKDINCNRQGSTDQQSPDIDGTRSYQIPNGISYLHAGRKFY
KNKNENNKARSPVSYWEYAMSVNVCDIVYLHCHQRSDSGGTLVLVGQDGVQRPPICFPPG
GHLLAFLTCLETGLLPHGHLDPPLWAQHGKGKVFPRLRNRSSRSSSSSGSQSEVGEEVTD
FVFRVTTGTSISSYLPSHIDLNPIQDNFNAYATNSSLYLSQGSDYSIKSRSRSSLKVLCD
TMRRQIISRAFYGWLAHCRHLSTVRTHLSALVISDQCPIPSEPVAPIDEATWNEFIKSGR
IEDKTELMRHVYFGGVQHSSRKIVWPFLLNHYPLESSPEERVRIDREIEMEFKTVMSDWM
AVEKIVKQKEKEIQAAHLAKLSCDSVTSSISSFDGQPQFPSAVLRKQSTVNDVFASTETD
CSFVLPIDEEVDGDNDIQENGGVVHGKEERIDRNRKENRSLTKKALNTARRHSDHTPYSS
ISTEPSLLDRRSSNITNPLGESLEDLRLDNILETDGNCSIGEKNGIDQDYIKEEKVQTRR
LQKQTVIDIEGNMDKVKEAVITNGDLHDNNNQPEVDDSSAESQKSGATSYSPELLDSFGL
NLHRIEKDVHRCDRNHSYFAEPKNLNKLCNVMCSYVWNHLEVGYMQGMCDLAAPLLIIMD
DECRVYSCFTQLMKRMVNNFPNGGAMDSHFANMRSLIQILDSELFERTVHQNGDYTHFYF
CYRWFLLDFKRELSYEEDVFAVWERIWAARHVSSDHFVLFFALALLHTYRDIILNNDMVF
TDIIKFFNEMAERHDAKKILKLAQNFVFEVQSLISK
Nucleotide sequence
Length: 6,437
>Harore.CG.MTP2014.S261.g13468.01.t
TATTTAGTATAATTCTCCTCAATTTAACACCTAGCTTAATCAAAGCTATGTTGATCTGTT
GATTTACATTGCTTGGTGAATTTGTTTACAAGACTTCAGGGGAAATTTGAATTTTGTTAC
TGAATAAACGTGCTGCTGCTCAATAACCTCAATAACTCAACTAATCCGAGGCACTTTACA
ATCATGGGCAGTATTGATGAATTGTCAGATGCTCGATGTCGCACTTGTCAAATCATGTTT
CAAACTTTTTTTAGCGGCTGAATTCCATGAATCTCTGCTCAGAACAGTCAAACGTCAAGT
GAAGGCTATCATGGAAGAAGCAGTGACAAAAAAATTTGTACATGAAGAAAGTGAACATTT
ACTTCGACTCAGTGCGACAATTCAGACATGTCTGCTGGACCAATTGAAAAAGAGGACTGC
CGGCTTCTTACGGAGTAACAAGATCGCGAATTTGTTCAATAAGGTTAAGAAATCAATTCC
AGAAGTCCAGCAATTAATCACGAAAATTGAAGAAACTGAAGCTTCCTACGAGAGCCAACT
GGCAGACATCGAGAAAGGAATAAACGGTACAAAATCCCAGTGTATGTATGTACGGCAATT
AAAACATGTGTGGGTTCGTCTGGCCCTCACAGAAAAACTTCTTGCGAAAATGGTTCAACA
CTTGGTTGACAATAGCAGTAAATATTATGAGAAGAATGCTATCATGGCCGACCGTGTATG
TGGACAGTTAATTTCTTCATTGCTTGTTGGCCCTTGTGCTCTCGAGTACACGAAAATGAA
AACCTCTGATCACTATTGGTCAGACCCGCCAGCTGACGAGCTTCTCCAAAGACACAAGTT
ACACAGCAGAACCCAATCTCCAGGATCGCCCGGTCGTAGACCAGCTCTCCATGCTGCAGC
TAAATACGGAGCGTTTGATTCTGGCGATAAAAATCCTGCGAACGCGAACAGCATCGATTC
ATCTTTTCGCGATTATGTGGAATCGCTTCACCAGAACTCAAAATCCACTTTACTCTACGG
CAAAAATAATGTGGTTGTCCAGCCGAGAGAGGAAATCAACCCAATACCAGGCTATTTATC
TCTTCATCAAATCGCCGATTCATTACATGTAAAATGGACGCCCAATCAACTGATGCACAG
TGGTGAAAGTAACACGAAAGACATCAACTGCAATAGGCAAGGCAGCACTGACCAGCAAAG
TCCTGACATTGATGGTACAAGATCATATCAAATACCGAACGGAATCTCCTACTTGCATGC
TGGTAGAAAATTTTATAAAAACAAGAATGAAAACAACAAAGCAAGAAGTCCAGTGTCCTA
TTGGGAATATGCCATGAGTGTCAATGTCTGTGACATTGTGTACCTTCATTGTCATCAGAG
AAGTGACAGTGGAGGAACACTGGTACTGGTCGGACAAGATGGAGTTCAACGTCCACCAAT
ATGTTTTCCTCCGGGCGGGCACCTTCTTGCATTTCTGACTTGTCTCGAGACTGGACTTCT
GCCTCATGGTCATCTTGATCCTCCTCTTTGGGCTCAGCATGGAAAAGGTAAAGTTTTTCC
AAGATTGAGAAACCGCTCTTCCAGATCAAGTTCAAGTAGCGGAAGTCAGTCAGAAGTGGG
AGAAGAAGTTACAGATTTCGTATTCCGTGTTACAACTGGGACTTCCATCTCCAGCTATCT
CCCATCCCACATCGACTTAAATCCTATTCAAGATAATTTTAATGCATACGCCACAAACTC
CAGCCTCTACCTATCTCAAGGCTCTGACTACAGCATAAAGTCTCGATCGAGATCATCTCT
AAAAGTTCTCTGCGATACAATGCGAAGACAGATCATATCTCGGGCGTTCTACGGCTGGCT
TGCTCACTGCCGCCACCTCTCAACGGTACGGACGCATCTGTCAGCTCTAGTAATTTCGGA
CCAGTGTCCCATTCCTTCAGAGCCAGTCGCACCTATTGATGAAGCCACATGGAATGAATT
TATCAAAAGCGGCAGGATAGAAGATAAGACAGAGCTCATGCGTCATGTGTACTTTGGAGG
CGTCCAGCATTCGTCAAGAAAAATTGTGTGGCCATTCTTACTTAATCACTATCCGCTTGA
GAGTTCTCCCGAAGAGAGGGTTCGTATCGATAGAGAAATTGAAATGGAATTCAAGACTGT
CATGTCCGACTGGATGGCTGTTGAAAAAATTGTCAAACAGAAAGAGAAAGAGATACAAGC
AGCTCATCTGGCAAAACTATCATGTGATAGTGTAACAAGCTCTATATCTAGTTTTGATGG
ACAACCACAGTTCCCATCTGCTGTGCTCAGAAAACAATCCACTGTCAATGATGTCTTTGC
CTCCACAGAGACAGACTGTTCTTTTGTGCTTCCTATAGATGAGGAGGTGGATGGAGATAA
TGATATTCAAGAGAATGGTGGTGTTGTTCATGGGAAGGAAGAAAGAATTGATAGAAATAG
AAAAGAAAACAGATCACTCACAAAGAAAGCATTAAACACGGCAAGAAGGCACAGCGATCA
CACTCCATATTCATCAATAAGTACTGAACCTTCACTTCTGGATAGAAGATCTTCAAATAT
TACGAATCCCCTTGGAGAAAGTTTGGAAGATCTGAGACTAGACAACATCCTTGAAACCGA
CGGCAACTGCTCTATAGGTGAAAAAAACGGCATAGATCAAGACTATATCAAAGAAGAAAA
GGTCCAAACGAGACGTTTACAAAAACAAACTGTGATTGATATCGAAGGAAATATGGATAA
AGTAAAAGAAGCCGTAATTACCAATGGAGATCTCCATGACAATAACAATCAACCTGAGGT
TGATGATTCTTCTGCTGAATCTCAGAAATCTGGTGCTACTTCCTACTCTCCTGAGCTCCT
TGATAGCTTTGGACTCAACCTGCATAGAATTGAAAAAGACGTTCATAGATGTGATAGGAA
CCACAGCTACTTTGCTGAACCTAAAAATCTGAATAAACTTTGCAACGTCATGTGCAGTTA
TGTGTGGAACCATTTGGAAGTTGGCTATATGCAGGGCATGTGTGACCTAGCAGCGCCATT
ACTTATCATCATGGATGATGAGTGTCGTGTCTACAGTTGCTTTACTCAGTTGATGAAGCG
AATGGTCAATAACTTTCCTAACGGCGGAGCTATGGACTCGCACTTTGCTAACATGCGTTC
ATTAATTCAAATTCTCGATTCAGAACTCTTTGAGCGAACCGTTCATCAGAATGGTGACTA
CACTCACTTTTATTTTTGCTATCGCTGGTTTTTGCTCGATTTCAAGCGAGAATTATCTTA
TGAGGAAGATGTTTTTGCTGTCTGGGAGAGGATCTGGGCAGCTCGTCATGTATCCTCCGA
TCATTTTGTTCTTTTCTTCGCTCTCGCACTTTTACATACATATCGTGATATCATACTTAA
CAACGACATGGTATTCACTGATATTATCAAGTTTTTCAATGAAATGGCAGAACGTCACGA
CGCCAAAAAGATTCTCAAACTTGCCCAGAACTTTGTTTTCGAGGTACAAAGTTTGATTTC
AAAATGATGAAGAGAAAAAGGAGATTGTCAGTGACTGAAGTCTCTTGATGAAAATTGGTA
TGTAAACTGTTTAGCTTCAATGATCATTGGTATTTTCTTTACTGAACCAACAAACAACAA
ACCTTTCTAAAAGTTATATATTAGATATGAAGATATAGAATTTTATTAGTCAGAAATTAA
CTACTTGTAGATTTTTCTAAATACAGTTAATTGTAAAATACTTTTGTTATATGTCATGTT
TTGTAAATTTAATCCAGTTATCGGAACTTTTTCAGTGCAATTTGCAACACTAAAATGCAG
TTTATTAAAGAGATTTTTGACAATTTTTACTCTTTTTCCAAGTTCAACAACAGCTCCTGA
ACTAAAAGGAGAATTATATCTTCATCTTTTTTGTATGTTATCTGAATTTAGCTTAGAACT
TTAATTAATTTCAAAAAAGGGATGTATTTTATCTTTTGAAAAATATGTAAATAACATCTA
CCTAGAAACATTTATATATATATATATCAACAGATATCTATTTTATATCTACTTGTTGAG
TGCAATGTTGATGTTATATCCATTCTTTACAATTTATTGAGTAGAAACATTGTTATCACC
TTCTGTGGAAGTAGTTAATCTTGTTGCTTCAGAAGATTATGATACGTATTTGTAACAATA
ATTATGTTATAGCACTTCACGTTCAAGTTAGCTGCTGGCACACAGGTTTGATAATAAGAA
TTTGATCCCACTAACTTGCCAGTTTACTAGCAACTTACATTATTGTTACATACCTAGATC
TACTTCCCTTATTCTGTTCCTAACTTGCTCACATCATAATATTCTACAATTATTGTAGTG
TCATTCCTTCCCTCAATCTGCCATTTCCAAATCATTCTAGTGAATGTGGAATGCCTACTC
ATTGCAGTCATACAGCATAGTTTATAGCGTTCTCTCTACTTAAAACCTTTATTGCTAGTT
ACACGGCATACAAGAAATAATTTCACGGCATATAACAAATAATTTTTTAGCAGTTGTTAG
TCTGTAACTTATTTGCACATTTTCCCAACCTGCACATGTTATATTTAACGTTTGATAGCA
CATTTAAATGGGTAAGTTTTGTCTTTGCACTGGTCTGACCACTATGCTTTGGTGTAACTC
GCACTTACATCTGCGTGTTGAAATGAAGTCGTCTTTTGTGTTTTGATCTTTATGTTCTAT
TGCTAAAAATAAAAGCAAACACGGAAGGTACTATTATATTTTATGGCCTTTTAATGCAAA
CATGTAAACATCATTTTTCCGATTATGACGAAGTTCAGAAGAATAAAGAATTTATTGGAA
TCAAGAATTGCGATGGGAAGATTGCAAAACAGTGAATGCGGCGAAGCACATTTTGGCAAA
TATAGTTAAGGGAGTTGTCTGCAAGCAGACGAAGATTCATTAGAACGTCGTACTGTTTTG
CATTGTACTATACGAGTAGATTATGAGGAACGTCTTTGATTACATATGTAAAAGTCCAAA
AGAATATTTTTAAAATGTCACACATTGAAAATTTCTAACGCCATGTGTATTTCACATCGC
GCGTGTTTATTGCGACTTAACAGCCAAACGATGAGCGACGCCCTGTGTAGTTGCGTTAAC
GGTTAATACCCCGAAAGTTGACCCGTGTCTGAATTTATACGAAGGGACGTAACCCATATA
TTTGGGTAAGACTCCTTCATGCTTATGATATATGACGCCATCGTTACGTGTTAACATGCG
GTCATGGTCAAATGAGTCCGGCCTCTTCCGTTCTTTCGGCGTATTGAACTTAGTCGTTTG
GTCAGGCCACGTGTACCAAAAACTGGACCCGTAAAGCGTTTGCGGGTATCCTGTTGGATG
TTTCGAAACTATCTGAGGAGTGCTCTTTCTCAAGGATGGTACGGAATCTCTGCTTCTGGA
TGAGGAAGCAGTGGTTGGGGCTTTGGGAGGTTCATCTTTACCGCTCTCAAACCTGGGACG
TACATACTCAGGTCTGGCTGTAACAGGCCGAGAGCGTAGTTGTCGAAGTGCTGAAGCACT
ACCCGCTGACATCATAGATATATGCGACGGAACTGGACTTGGTGTATAATTGTAAGCCTC
ATCGTTGCCTAGCACGGTCTGTCCATTTTTATGTCGCGTTGAAGTAACAGGTGCCGACTT
AGCTCGTCCCTGACCCTTCCCGTTTTCTGGCGTGGCACCAGAGTTTTTTAGTGGCGAAAA
CTTTTTTTCTTCTTTCACTGGGATGGGTATTTCGTCTTCCTCCTCCGGCCTAAAAAACTG
TTTCGATCTAGAGCGATAGCCCGTTGCTGTAGTCGGTTTCATTGGGCTACTGATGCACCG
AACCAACGACCTTATGACCCGTAGTTCGTTGATGCTCCCACGGTAGGAAGGGACATGTCC
ACTAAAACCGATGACTGGTTCTGGGTTACTTTCAGCTTTGATTGGTTCATCTCCGTATTT
CTTGATATATTTTTCATTTTGTTTCCGAAGAAATTCAGTGTAGTTGAAGTTTAAACTTGG
CATATTGCGGACAGACGTTCCTTAGTAGGGCTAATGCTTTAGAAGTTCATTTGGTTATTC
TGTATCAGAGTTATTACGATGCCTGTCCAAGCTGTTACGATGGAAGCTAATTTACAAAAT
ACGGGTTAGTTTCCTACTACAGTATCCTTACTGAACTTGTGTCCATGTATTCCTTCGCTA
TTAAATTAGTTTGGCTAGCTGATCCTTCGTGACATTCATGTTATTAGTTTAGTGCCTTTG
AACCTAGTTGTCTACCATTGATTTTAGATCCCCGCTCTTAAGACCTAGTAAGCATTGCAA
TATGATTCTTGACGTAGTTTTTATCGTTCGCTTCCTCAGTAAAACCTCCAAAGCTTTTAA
TGAGACAATGACACAAC
| SUPERFAMILY |
Run_dom_sf (IPR037213) - T[21-207] 8.37E-25 |
| ProSiteProfiles |
Run_dom (IPR004012) - T[49-199] 18.361 |
| Pfam |
Run_dom (IPR004012) - T[58-196] 2.8E-25 |
| SMART |
Run_dom (IPR004012) - T[136-196] 1.4E-13 |
| CDD |
SGSM1/2 (IPR037745) - T[270-487] 4.75278E-75 |
| SUPERFAMILY |
Rab-GTPase_TBC_sf (IPR035969) - T[592-654] 2.3E-40 - T[888-1005] 2.3E-40 - T[984-1105] 7.06E-21 |
| SMART |
Rab-GTPase-TBC_dom (IPR000195) - T[612-1077] 3.5E-28 |
| ProSiteProfiles |
Rab-GTPase-TBC_dom (IPR000195) - T[615-1050] 26.471 |
| Pfam |
Rab-GTPase-TBC_dom (IPR000195) - T[876-1073] 4.1E-34 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SGSM1_HUMAN | 44.251 % | 915 | 0 |
| SGSM2_HUMAN | 42.857 % | 550 | 7.76E-179 |
| TBC15_HUMAN | 31.579 % | 119 | 2.23E-27 |