- Transcript 'Cisavi.CG.ENS81.R173...' >
- Transcript 'Harore.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S25.g01265.02.t
Possible name(s)
LGR4; LGR5; LGR6
Gene model
Location
S25 [458,456 / 465,212]
Amino acid sequence
Length: 1,167
>Harore.CG.MTP2014.S25.g01265.02.p
MSARPVPGPRCCLNSTIIRDTKLQYKHKSIGETKRLLCNLLRMLNENRIETLPGMAFAGN
PDIEVLSLENINDQVEFPDFSDCSALQKLTISGGKISSLPLNLCNNLPSLEYLSVDRNRL
RNLSGLQSCQHLTVLRASKNKVVKLRSSEMSNLNTLQELDLSGNDIDEIDQDAFSTMSLQ
RLNLGNNFFTYLPVRGIGSLRELNVTGVRTLLYLPPIELFHSLSSLVAFYPYHCCQLAKA
SRLSGKQWTTRVNQFESYGQHRSQISPIMAPLFPVSSTPAIQCTPDPGPLTPCDDLLPST
ALRIFSWLFMVVTFILNSLILFSCGLRYSIQRRQRRRHGNLETGDVDGMLASGGNMIDPP
YMSSPDAHIINSDDSDLSKSHYFLNISRAGGTMSDDNDTFDITLCHLAFADVIVTIYTAV
ILSYDHSTLGEFAEHGAWWQQSAVCHSAGFLLTFGTQLGFCTIVIMAVERYLVAMHPLQP
EKHLKKGLVLTLTLSSAWILSLVTATVTLFGGGGLESGETIREMLPAQNGAACLPWTTDF
TYVAVLVSVHILFCVIVTLLSLLILCSSPKQTWLIPKKNTRRQVALAITFNVAFIVPLAI
ISLYVSGVMTFSKLEPGENGEYYSVGSMVTTIQSDDSGIAVLDMGRVLAFVMFIIPFRPF
LNPILYIIFNKSLRRDLKYLGRKIFVGDTRERHISFPPDRTNVLETMYDGSVMASHQANN
SFPSYPQTVFDSSLLQRTSYDSGGIATPSFFTPSIRTLHTVIAHSADRSSSNHISTLQGS
ERGKRRRRRSRSRRTERRPVPDSDLTTESEVITFHRANSAVYYNPESRERRRKKLSVRNG
GVNAKDEFQRLIFPRHPLASSSSHGSDSTVYPILPANRTDLPSSNTMNVNAAVTKDTNSK
SQSKLVSSKQTTHYDLSALQTLNIPEKNTLLSREINNNSGKSPSASIITGDVTSTTPLSN
DVDLEVASITSSMIEPVYDVKDVECFEDKDLTKRTSLDSVRPKRYQRATSREEDYLLLAV
RNSSRNEALKELDPNTGLPLSRKNSTASHSSASRLCDLTKRGEKVISGCDYCDSSASKDS
GIHSEIDSTSGASYSDASIGRRLRFSTNGALTNLLPIQNTSRVNENDIARFELSAPLKTQ
DFQIVPATTTSSHIKNFSEILNTETAI
Nucleotide sequence
Length: 3,504
>Harore.CG.MTP2014.S25.g01265.02.t
ATGTCTGCTCGTCCTGTTCCGGGACCCCGATGTTGTCTAAACTCGACTATAATTCGTGAC
ACTAAGCTGCAATACAAACATAAATCTATTGGTGAAACTAAACGATTGCTTTGTAATCTG
CTTAGGATGCTGAATGAAAATAGGATTGAAACTCTTCCTGGAATGGCGTTTGCTGGAAAT
CCGGATATCGAAGTCTTGTCGCTGGAAAATATCAATGATCAAGTAGAATTTCCAGATTTT
TCTGACTGCTCCGCACTACAGAAACTAACTATATCTGGTGGTAAAATCTCCTCGCTTCCT
TTGAATTTGTGCAACAATCTGCCATCGTTAGAATATCTTTCGGTAGATCGAAATCGACTA
CGTAACCTTTCTGGCTTACAGTCCTGTCAGCACCTGACAGTTCTTCGCGCTAGTAAAAAC
AAGGTTGTGAAGCTGAGATCAAGCGAAATGAGTAATTTGAACACTCTTCAAGAATTAGAT
TTAAGCGGAAACGATATAGACGAAATTGACCAGGATGCTTTTTCCACCATGTCACTGCAA
CGATTGAATCTCGGTAACAATTTTTTTACGTATTTACCCGTTCGAGGAATTGGCAGTCTG
CGCGAACTCAATGTAACTGGCGTACGGACACTGCTCTACTTGCCTCCGATCGAGTTATTT
CACAGCCTATCGAGTCTTGTAGCGTTCTATCCGTACCATTGCTGTCAACTAGCGAAAGCT
TCAAGGCTTTCTGGAAAGCAATGGACGACACGGGTAAATCAGTTTGAGAGCTATGGCCAA
CACAGATCACAAATCTCTCCAATCATGGCCCCTCTCTTCCCAGTTTCGTCCACCCCAGCA
ATTCAGTGCACTCCTGATCCAGGACCTTTGACCCCGTGCGATGACCTTTTGCCTTCGACC
GCGTTGCGAATATTTTCTTGGCTCTTTATGGTGGTCACCTTCATTTTGAACAGTCTTATT
TTGTTCTCTTGTGGACTCCGATACAGTATTCAGCGGCGACAACGTCGTCGTCATGGTAAC
CTGGAAACTGGTGATGTCGATGGAATGCTCGCTAGTGGAGGAAACATGATTGATCCGCCT
TATATGAGCAGCCCAGACGCACACATCATCAATTCTGACGATTCAGACCTCTCCAAGTCT
CACTATTTTCTCAACATTTCTCGTGCTGGCGGTACAATGTCAGACGATAATGATACCTTC
GATATAACGCTGTGTCACTTAGCTTTCGCCGATGTCATAGTGACGATATATACTGCAGTT
ATATTGTCTTATGACCATTCGACGTTGGGTGAATTTGCAGAGCACGGTGCTTGGTGGCAG
CAGTCGGCCGTTTGTCATTCTGCCGGATTTTTGCTTACTTTTGGAACCCAGCTTGGATTC
TGCACCATAGTTATAATGGCAGTTGAGAGATATCTGGTTGCCATGCACCCGTTACAACCG
GAAAAGCATCTAAAGAAAGGCCTCGTTCTCACTCTCACACTGAGTTCTGCTTGGATACTA
TCGTTAGTCACGGCAACCGTCACTTTGTTCGGTGGCGGCGGATTGGAATCGGGCGAGACA
ATTCGAGAAATGTTACCTGCCCAGAACGGAGCAGCCTGTCTTCCCTGGACCACAGATTTT
ACATATGTGGCCGTATTGGTGAGCGTTCACATTTTATTTTGTGTGATCGTAACACTTCTC
TCTCTGCTTATATTGTGCTCAAGTCCAAAACAGACATGGCTTATTCCGAAAAAAAATACC
CGTCGGCAGGTGGCGCTGGCCATCACATTCAATGTAGCTTTTATTGTTCCACTGGCCATA
ATATCCCTTTATGTTTCCGGGGTTATGACCTTCTCTAAACTCGAGCCTGGAGAAAACGGA
GAATATTATTCAGTCGGCAGTATGGTAACTACGATTCAGTCGGATGACAGTGGCATTGCT
GTATTAGATATGGGACGGGTCTTAGCGTTTGTCATGTTCATCATACCGTTCAGGCCTTTT
CTGAACCCAATATTATACATCATATTCAATAAGTCGCTGCGTAGAGACCTTAAGTACCTT
GGTCGGAAGATATTTGTTGGCGACACGAGAGAAAGGCACATTTCTTTCCCGCCGGATCGA
ACCAACGTGCTCGAAACGATGTACGATGGCAGCGTAATGGCCTCGCATCAAGCTAACAAC
AGTTTCCCTTCGTATCCGCAAACCGTATTCGATTCAAGTCTGCTACAACGCACGTCCTAT
GACAGTGGTGGCATTGCGACGCCCAGTTTTTTCACTCCCAGTATAAGAACTTTACATACC
GTCATAGCACATTCGGCTGACCGAAGTTCAAGTAATCACATTAGCACTTTGCAAGGATCA
GAGCGAGGTAAACGGCGGCGTAGAAGATCGCGTTCTCGTCGCACGGAACGACGACCGGTG
CCAGATTCCGATCTGACTACGGAATCGGAAGTAATCACATTTCATCGGGCTAATTCTGCA
GTTTATTACAATCCAGAATCGCGCGAGCGACGAAGAAAAAAGTTGAGCGTGAGAAACGGA
GGAGTAAATGCTAAAGATGAGTTCCAGCGTCTCATCTTTCCTCGTCATCCTCTTGCATCC
TCCTCATCCCATGGTTCAGATTCAACCGTGTATCCGATTCTTCCAGCCAACAGGACAGAT
TTGCCATCTTCTAATACTATGAATGTCAACGCTGCTGTCACCAAGGATACCAATTCAAAA
TCACAATCGAAGCTCGTAAGCTCAAAGCAGACAACCCATTACGATCTGTCCGCCCTTCAG
ACTTTGAATATACCCGAAAAAAATACACTACTTTCGCGAGAAATTAATAACAACAGTGGG
AAATCACCTAGTGCTTCCATAATTACGGGTGACGTAACCTCAACAACGCCTTTGAGTAAT
GATGTAGACTTGGAAGTAGCGAGCATAACATCATCCATGATAGAGCCTGTTTACGACGTT
AAAGATGTCGAATGTTTCGAAGATAAAGATTTAACAAAGAGAACTAGTCTCGATTCTGTA
CGCCCAAAGCGTTATCAGCGTGCTACATCCCGAGAAGAAGACTATTTGTTATTAGCTGTG
CGCAACTCTTCTCGTAACGAAGCACTTAAAGAGCTAGACCCCAACACGGGTTTACCTCTT
TCCCGAAAAAACAGTACCGCCTCGCATTCTTCCGCTTCCAGACTTTGTGATTTGACAAAG
AGAGGCGAAAAGGTTATCAGCGGGTGTGATTACTGCGATTCTTCTGCCTCTAAAGACTCC
GGTATCCATTCAGAGATCGATTCGACTAGCGGCGCGTCGTATTCTGACGCAAGCATCGGT
CGTCGTTTACGATTCTCCACTAATGGGGCTCTTACAAATTTATTGCCGATTCAAAACACT
TCTAGAGTGAACGAAAACGATATTGCTAGATTTGAGTTGTCCGCTCCTCTAAAAACACAA
GATTTTCAAATCGTACCTGCGACGACGACATCCAGTCATATTAAGAATTTCAGCGAAATT
CTAAATACAGAAACGGCAATTTGA
| Pfam |
LRR_5 (IPR026906) - T[17-116] 0.041 |
| Gene3D |
LRR_dom_sf (IPR032675) - T[35-303] 1.7E-45 |
| SMART |
Leu-rich_rpt_typical-subtyp (IPR003591) - T[37-59] 55.0 - T[107-131] 8.1 - T[153-176] 1.0 - T[178-200] 130.0 |
| ProSiteProfiles |
Leu-rich_rpt (IPR001611) - T[85-105] 5.024 - T[109-130] 7.72 - T[131-152] 4.855 - T[155-176] 8.12 - T[178-201] 5.332 |
| Pfam |
Leu-rich_rpt (IPR001611) - T[131-187] 1.2E-7 |
| ProSiteProfiles |
GPCR_Rhodpsn_7TM (IPR017452) - T[378-666] 16.38 |
| PRINTS |
GPCR_Rhodpsn (IPR000276) - T[400-421] 4.9E-10 - T[452-474] 4.9E-10 - T[489-510] 4.9E-10 - T[586-609] 4.9E-10 - T[648-674] 4.9E-10 |
| Pfam |
GPCR_Rhodpsn (IPR000276) - T[401-779] 3.2E-11 |
| ProSiteProfiles |
IQ_motif_EF-hand-BS (IPR000048) - T[770-799] 6.723 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LGR6_HUMAN | 25.806 % | 140 | 7.97E-34 |
| LGR5_HUMAN | 30 % | 122 | 3.73E-28 |
| LGR4_HUMAN | 26.837 % | 107 | 1.29E-23 |