- EST 'AHC0AAA229YK06_RM1' >
- EST 'AHC0AAA232YH17_RM1' >
- Transcript 'Harore.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S258.g04606.01.t
Possible name(s)
TBL1X; TBL1XR1; TBL1Y
Gene model
Location
S258 [125,779 / 135,804]
Amino acid sequence
Length: 591
>Harore.CG.MTP2014.S258.g04606.01.p
MSITSDEVNFLVYRYLEESGFHHSAFVFGLESHISQSNINGALVPSAALISIIQKGLQYV
EAEISINEDGMIFEGRFSESLSLVDAVMPDVVLARQQQLREKLAAQKLQQEQEKLRAAQK
SSEEMKAANGDTNQQDNGGVPVAPVTNVSSATSQLSTSSTMSNSDNTVTMTMPVVTAATS
TTSINQEPQLNGDSTANMNGIGTPNDLNSQGHQEPMEIENNYNDIKISLSKATVLRGHDS
EVFICAWNPTCDLLASGSGDSTARIWNLKEDTVTSSSTASASGQQLVLRHCIKEGNQEVP
SNKDVTSLDWNCDGTLLATGSYDGFARIWGTDGRLANLLGQHKGPIFALKWNKQGNYILS
AGVDKTTIIWDARSGESKQQFPFHHAPALDVDWQNNTCFASCSTDMSIHVCRLGCDKPVK
TFKGHSNEVNAIKWDPSGSLLASCSDDMTLKVWSMKQDTYVHDLRAHNKEIYTIKWSPAG
PGSQNPNQNLLLASASFDSTVRLWESERGVCLHTLTKHQEPVYSVAFSPDGRLLASGSFD
KCVHIWNTQSGQLVRSYEGTGGIFEVCWNALGTKVGASASDGTVCVLDLRK
Nucleotide sequence
Length: 2,200
>Harore.CG.MTP2014.S258.g04606.01.t
TTCAGCAGCTATCTTACTTAACCATAGATTTATTACAAGTAGGGGAATATTTACTAAGAG
AATCTTTACCTCTGTAACTGAAACTGGAAACAAAAATGGAATAAACGAACGCTTGGAATT
ACGGAAAATAAGGATACTCAAAATTGAATGTGTCCTTGGATGTGAAAACGACCTTGGGAT
CGGAAGAATACAATCACGAAAATGAGCATAACTTCGGATGAAGTCAATTTCCTTGTCTAC
AGATATCTGGAAGAATCGGGTTTCCATCACAGTGCGTTTGTATTTGGGCTTGAGTCTCAC
ATCAGTCAATCAAATATTAACGGAGCTCTTGTACCGTCAGCTGCACTTATATCAATAATT
CAGAAAGGACTGCAGTACGTCGAGGCAGAAATAAGCATAAACGAGGATGGAATGATATTC
GAAGGTCGATTTAGTGAAAGCCTTTCTCTGGTAGACGCCGTCATGCCAGATGTCGTGCTA
GCAAGGCAACAACAATTAAGAGAAAAACTAGCCGCTCAAAAACTCCAACAAGAGCAGGAG
AAATTACGGGCAGCACAAAAGTCATCAGAAGAAATGAAAGCCGCCAATGGTGATACGAAC
CAACAGGACAATGGCGGCGTGCCTGTCGCACCTGTCACGAACGTTTCATCAGCAACGTCA
CAATTGTCAACCTCGTCGACTATGAGTAACTCTGATAATACCGTTACCATGACAATGCCA
GTAGTAACGGCAGCGACCTCAACGACCTCTATAAATCAAGAACCTCAATTGAACGGAGAT
AGCACAGCAAATATGAATGGAATAGGCACGCCGAACGACCTGAATTCACAAGGTCATCAA
GAACCTATGGAAATAGAAAACAATTATAATGACATCAAGATCTCGTTAAGTAAAGCGACT
GTTCTACGAGGACACGACTCGGAAGTTTTCATATGTGCTTGGAATCCAACGTGCGATCTG
CTTGCTTCTGGCTCTGGTGACTCAACAGCGAGAATATGGAATTTAAAAGAAGATACCGTT
ACATCTAGCTCAACAGCATCAGCTAGTGGACAGCAGTTAGTGCTCAGACATTGTATCAAG
GAAGGAAATCAGGAGGTTCCTAGTAATAAGGACGTCACATCGTTAGATTGGAATTGCGAT
GGAACGCTCTTAGCGACCGGCTCTTACGATGGTTTCGCGAGAATATGGGGAACGGACGGT
CGTCTCGCGAATCTCCTCGGTCAGCACAAAGGTCCAATATTCGCTTTGAAATGGAACAAG
CAAGGAAACTACATATTGAGCGCTGGTGTCGACAAAACAACTATAATATGGGATGCGAGA
TCTGGAGAATCAAAACAACAATTCCCTTTTCATCATGCACCAGCACTTGACGTCGACTGG
CAAAACAACACGTGCTTTGCTTCTTGTTCGACAGATATGAGTATACATGTGTGTAGGCTA
GGATGCGACAAACCAGTAAAAACATTTAAAGGTCATTCGAATGAAGTGAATGCAATAAAA
TGGGATCCTTCAGGAAGTTTACTAGCTTCGTGTTCCGATGACATGACGTTGAAAGTTTGG
TCGATGAAACAAGATACATATGTTCATGATTTAAGAGCTCATAACAAAGAAATATATACA
ATTAAATGGAGTCCAGCAGGTCCGGGGTCACAGAATCCCAATCAGAATTTGCTGCTTGCA
AGTGCATCTTTTGATTCAACTGTACGACTCTGGGAATCTGAACGTGGAGTTTGTCTTCAT
ACATTGACGAAACATCAAGAACCAGTGTATTCTGTTGCATTCAGTCCTGACGGTCGTTTG
TTAGCAAGTGGTTCATTTGATAAATGCGTCCATATATGGAACACGCAGAGCGGTCAGTTG
GTTCGAAGTTACGAAGGAACGGGAGGAATATTTGAAGTTTGTTGGAATGCGCTAGGGACA
AAAGTTGGAGCAAGTGCTTCAGATGGAACGGTTTGTGTGCTAGATCTACGAAAATGAGAA
ATATCGTTGTACGAAATGATGAAAAGCAAAATATGGTAATCTACCATGAGTGACGCTGCT
GTACTCCTGGTTCTTATTTAGCAGAGACGGTCACGATCACACCCAGGCAGGATGACGACG
GGATCAGGAACTGTGTGTGTTTAATTACCTCTGTCTAATAGCGCGAGTTTTAGATTTTGC
GAAGTTTTTTCGAATTTGACGATCGGTTTTAAAAGAAATC
| ProSiteProfiles |
LisH (IPR006594) - T[4-36] 10.458 |
| SMART |
LisH (IPR006594) - T[4-36] 9.0E-6 |
| Pfam |
LisH (IPR006594) - T[6-32] 5.1E-8 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[223-591] 7.2E-159 |
| SMART |
WD40_repeat (IPR001680) - T[228-267] 4.7E-8 - T[285-330] 2.6E-4 - T[332-371] 4.3E-6 - T[374-412] 0.059 - T[415-454] 1.3E-11 - T[457-505] 1.8E-7 - T[508-547] 6.2E-13 - T[550-588] 0.4 |
| SUPERFAMILY |
Quinoprotein_ADH-like_supfam (IPR011047) - T[231-569] 5.1E-69 |
| Pfam |
WD40_repeat (IPR001680) - T[233-267] 3.0E-5 - T[302-329] 9.5E-5 - T[340-371] 0.0027 - T[417-454] 3.3E-10 - T[461-504] 0.0015 - T[509-547] 2.8E-10 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[235-276] 15.087 - T[305-329] 10.074 - T[339-380] 13.683 - T[422-463] 16.29 - T[464-514] 10.508 - T[515-556] 17.426 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[235-556] 53.152 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[254-268] 1.9E-6 - T[492-506] 1.9E-6 - T[534-548] 1.9E-6 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[254-268] . - T[358-372] . - T[492-506] . - T[534-548] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TBL1R_HUMAN | 76.06 % | 647 | 0 |
| TBL1X_HUMAN | 76.471 % | 656 | 0 |
| TBL1Y_HUMAN | 66.214 % | 761 | 0 |