- Transcript 'Harore.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S251.g05210.02.t
Possible name(s)
NFX1; NFXL1
Gene model
Location
S251 [21,642 / 24,822]
Amino acid sequence
Length: 1,059
>Harore.CG.MTP2014.S251.g05210.02.p
MNQVNEYSDWSPCDYPPQVADGAEETERAAQEGRSSSNESVGKSRRFSKQRNIKDSSDGN
YTMKATQKKIPKHEIRFSHQKNQDVSQKRQECGMPSNDANLQQEDDRSSGLETSKFSIIR
SIGNRDVDTGFTENQSENAMVSTSKNSKPSRRRNERASAFQTTESQISVLLEQLTSGTYE
CMVCCDRVKQQHAIWNCEECHHAFHMGCIKKWARSPAASIENEGWRCPGCQNISKKFPST
YKCFCGKVNEPDWNRRETPHSCGEICGKKRKNNATCTHPCNILCHPGPCPACPASVIKAC
LCGKMTRKVRCSQVKPLKCLEQCGKKKNCCLHICETICHAESCESCEVNVEQTCFCGKAL
RSVLCGSEQFKIGESRKGQRVFSCEGVCDKLLDCGNHYCESVCHPGDCKQCSLLPSVIKT
CPCTQTLLVNMADDSGNKIDRKSCEDPIPECGKTCGKPLKCGGEEIHTCQLKCHSGECPP
CPNGESTMKCRCGKSEKDVSCSEITDDLYICDRRCNKKRKCGRHKCGKTCCTDNEHVCSQ
PCGRKLECKLHRCEETCHRGVCHTCYNVSFEELSCHCGAEVLFPPIQCSTKPPECANQCT
RSHPCNHNVNHNCHNEEKCPPCVVLVNKPCNCGKVIRKNIPCHQENVSCGDACKRSLPCG
HRCPKPCHKQQCLAEDEKCKQPCSIMRVECIHPCANPCHEGASCPRSPCKAMVTLRCSCG
LQEKQVECFNGGAMYQRLSSEAIAMQQHKGHSVDISPLFSNGSGKQRMLQCNEECSTMER
NRRLAEALNIKDPDMTSFEPHVYSTFLLNYVKQDHAFVRGVEQDITNLVEAVEWLDKNKR
NHAFPPMRREKRQVVHDLAEAFQCKSLSCDEEPNRSVTVTAVRGVSKIPRTLLSDTAKKS
LYPFPKNSDTQTGVSGRKPVEGKKRLLSSMKLVSMTSSSPGEKLKFHDLDQETKRPVSIP
RIYPGVGKLSSLSAARKPYGLKQSDHSSKNEGPSDIGIHNVSSQSMRDCTNERQSEDSQA
SARMHIQNLESYSSSAQKAKAPTQSNSRQPDIDYFDMTE
Nucleotide sequence
Length: 3,180
>Harore.CG.MTP2014.S251.g05210.02.t
ATGAATCAAGTCAACGAATACAGCGACTGGTCACCCTGTGATTACCCCCCACAGGTTGCA
GACGGAGCTGAGGAAACTGAAAGAGCTGCGCAGGAAGGGAGGTCATCCAGCAACGAAAGC
GTTGGAAAATCGCGACGATTCAGTAAACAGAGGAATATAAAAGACAGCTCGGATGGAAAC
TATACTATGAAAGCAACGCAGAAGAAAATTCCGAAGCACGAAATTCGGTTCAGCCATCAG
AAAAATCAAGACGTCAGCCAGAAAAGGCAAGAATGCGGCATGCCGTCGAATGATGCAAAT
CTTCAACAGGAGGATGACAGATCCAGCGGACTGGAGACATCTAAATTTTCTATTATTCGA
AGTATAGGTAACAGAGATGTCGATACTGGATTCACAGAGAATCAGAGTGAAAATGCAATG
GTGAGTACCAGTAAGAATTCAAAGCCGAGCAGACGTAGAAACGAAAGAGCGAGCGCTTTT
CAAACTACAGAAAGCCAGATAAGCGTTCTGCTTGAACAGTTGACTAGTGGCACATACGAA
TGCATGGTATGTTGCGATCGTGTCAAGCAGCAGCATGCTATATGGAATTGCGAGGAGTGC
CATCACGCGTTTCACATGGGATGCATTAAGAAATGGGCGAGGTCTCCGGCGGCGAGCATA
GAGAACGAAGGATGGAGGTGTCCCGGTTGCCAGAACATTAGTAAGAAATTTCCCAGCACA
TACAAATGCTTCTGTGGAAAAGTGAACGAGCCTGACTGGAATCGCAGGGAGACTCCTCAC
TCTTGCGGAGAGATTTGCGGCAAGAAAAGAAAGAACAACGCTACGTGCACTCATCCGTGT
AACATCCTATGTCATCCAGGACCTTGCCCTGCTTGCCCCGCTAGCGTTATCAAAGCGTGC
CTGTGCGGAAAAATGACAAGGAAGGTCCGGTGCAGTCAGGTCAAGCCCCTCAAGTGTCTT
GAACAGTGTGGCAAAAAGAAGAATTGCTGCTTGCACATATGCGAGACGATATGCCACGCG
GAATCTTGCGAGTCGTGCGAGGTCAATGTGGAGCAGACATGTTTTTGTGGTAAAGCCTTG
CGTTCCGTCTTGTGCGGCTCCGAACAATTCAAGATTGGAGAATCTAGGAAGGGGCAGAGG
GTCTTTAGCTGTGAAGGTGTGTGTGATAAATTGCTCGACTGTGGAAATCATTACTGTGAA
TCGGTCTGTCATCCCGGGGACTGCAAACAGTGCTCTTTACTGCCGTCCGTGATTAAAACA
TGTCCATGTACGCAAACCTTGCTGGTCAATATGGCGGACGATAGCGGGAATAAAATTGAT
AGAAAGTCATGCGAAGATCCCATCCCTGAATGTGGCAAGACTTGCGGAAAACCATTGAAA
TGTGGGGGTGAAGAGATCCATACTTGCCAATTGAAATGTCACTCTGGCGAATGCCCGCCA
TGCCCGAACGGGGAGTCGACAATGAAATGCCGCTGTGGAAAATCGGAAAAAGACGTCTCT
TGCTCGGAAATTACCGACGACCTTTATATTTGTGATCGCAGGTGCAATAAAAAACGGAAG
TGCGGGCGACATAAGTGTGGTAAGACTTGCTGCACGGACAACGAACATGTGTGCAGCCAA
CCTTGCGGGAGAAAGCTTGAGTGCAAGTTACATCGCTGCGAAGAGACCTGCCATAGGGGT
GTTTGTCACACTTGCTACAATGTCAGCTTCGAAGAGTTATCGTGTCACTGCGGTGCTGAA
GTGTTATTTCCACCCATTCAATGCAGCACCAAGCCACCAGAGTGCGCCAATCAATGTACA
AGATCTCATCCATGCAATCACAATGTAAACCATAACTGCCACAACGAGGAAAAATGTCCT
CCATGTGTCGTTCTAGTGAACAAACCATGTAACTGCGGTAAAGTGATCCGGAAAAACATC
CCCTGTCATCAGGAAAATGTCTCCTGCGGCGATGCTTGCAAGAGGTCGTTGCCATGCGGC
CACCGTTGTCCAAAGCCCTGTCACAAACAGCAATGTCTTGCGGAAGACGAAAAATGTAAG
CAGCCATGCAGCATCATGCGTGTAGAATGCATCCACCCGTGTGCGAATCCTTGCCATGAA
GGTGCTTCATGTCCCCGATCTCCTTGCAAGGCCATGGTAACTCTCCGGTGTAGCTGTGGC
CTCCAGGAAAAACAAGTGGAATGTTTTAACGGCGGAGCGATGTACCAAAGGTTGTCTTCT
GAAGCTATCGCTATGCAACAGCACAAAGGGCACTCCGTTGATATCAGTCCCTTGTTCAGC
AATGGCTCCGGGAAACAAAGGATGCTGCAGTGCAACGAAGAGTGCAGCACCATGGAGAGA
AACAGAAGATTGGCAGAAGCGCTAAACATCAAAGATCCAGACATGACTTCGTTCGAACCG
CATGTATACTCTACTTTTCTACTGAATTATGTCAAACAAGACCATGCCTTTGTCCGCGGC
GTTGAACAAGACATCACGAATCTAGTGGAAGCGGTTGAGTGGCTTGATAAGAACAAGAGG
AACCACGCTTTTCCACCAATGAGGAGAGAGAAACGTCAGGTAGTTCATGATTTGGCCGAA
GCTTTCCAATGCAAATCGTTGAGTTGCGACGAAGAACCTAACAGGAGTGTGACGGTCACA
GCAGTTCGTGGAGTAAGCAAGATACCTAGAACCCTCCTCAGCGACACTGCAAAAAAATCA
TTGTATCCATTCCCAAAAAATTCCGATACCCAAACAGGAGTGAGCGGTCGAAAACCCGTC
GAAGGAAAGAAAAGGTTGCTCAGTTCGATGAAACTTGTTTCAATGACATCATCTTCCCCG
GGAGAAAAGCTCAAATTTCATGACCTCGACCAAGAAACCAAGCGGCCGGTTTCCATACCC
CGAATTTACCCCGGCGTCGGGAAACTGTCGAGCTTGAGCGCTGCCAGAAAGCCCTACGGC
CTCAAACAGTCTGACCATTCCAGCAAAAATGAGGGTCCTTCCGACATCGGAATTCATAAT
GTAAGCAGCCAATCTATGAGAGATTGTACAAACGAAAGGCAAAGTGAGGATTCCCAAGCA
AGTGCCAGAATGCACATTCAAAATTTGGAAAGTTATTCCTCGTCTGCTCAGAAAGCTAAA
GCCCCAACTCAGAGTAATTCCCGTCAGCCTGATATTGATTACTTTGACATGACTGAATAA
| PANTHER |
NFX1_fam (IPR034078) - T[26-1031] 6.0E-286 |
| ProSiteProfiles |
Znf_PHD-finger (IPR019787) - T[178-233] 9.41 |
| ProSitePatterns |
Zinc_finger_PHD-type_CS (IPR019786) - T[181-230] . |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[181-231] 11.221 |
| SMART |
Znf_NFX1 (IPR000967) - T[276-294] 0.096 - T[329-348] 27.0 - T[394-413] 0.0021 - T[461-483] 0.002 - T[521-540] 26.0 - T[548-567] 0.94 - T[605-624] 8.6 - T[632-655] 210.0 - T[659-681] 0.61 - T[690-711] 3.6 |
| Pfam |
Znf_NFX1 (IPR000967) - T[277-293] 0.16 - T[394-412] 1.1E-5 - T[461-482] 0.0019 - T[521-531] 11.0 - T[542-565] 1.3 - T[659-683] 0.03 - T[691-710] 20.0 |
| SUPERFAMILY |
R3H_dom_sf (IPR036867) - T[798-900] 2.55E-15 |
| SMART |
R3H_dom (IPR001374) - T[804-882] 3.6E-9 |
| Gene3D |
R3H_dom_sf (IPR036867) - T[810-887] 3.4E-11 |
| ProSiteProfiles |
R3H_dom (IPR001374) - T[815-883] 12.877 |
| Pfam |
R3H_dom (IPR001374) - T[817-880] 2.4E-15 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NFXL1_HUMAN | 34.342 % | 233 | 9.79E-64 |
| NFX1_HUMAN | 46.842 % | 683 | 0 |