- Transcript 'Harore.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S250.g09734.01.t
Possible name(s)
GJC1; GJC2; GJD3
Gene model
Location
S250 [17,546 / 21,665]
Amino acid sequence
Length: 449
>Harore.CG.MTP2014.S250.g09734.01.p
MAWHILHGLLEQVRVQSTFPGKLWIIVMFIFRIVVVARIGDNVYHDEQANFVCNVLTPGC
ENVCFNRFSPISQLRYWSLMILVVSTPAILFFLYATHVIYHAGIKYPSEEDDEKKEIMTT
RSDQSYIHPPSLKRRRDEGFLPNGTTGPLFEVKKIGNADGKYKTAKFGNNRRNDDIRRRR
HVIRYDGDVKRKLSTDNNESNEEVYIDYRNKVPIFVDPHGQRVEFMKEVRRNRAEDDAIA
ERKFRKRMLEHPELYRAYWWHVFLRTLCEVGFLVGQYYLYGWSVHELYECDYWPCPKTVD
CFVSRPQEKTCLLWLMYVLGIIACLLSVAEFWTLGITRLKYAFLCCSHDESSEERRRRLA
LLETHSSHHDKKENDPLHPRLITGAVSFDSLSSDTTVESVHPYPNSYFVTIVGCFYLNMT
CFLHFLCTFKKNHFLMENYLRANILVSLR
Nucleotide sequence
Length: 1,709
>Harore.CG.MTP2014.S250.g09734.01.t
TTCAAGTATTACCGTCATCAGTTGCCTATATGACTTTTGTATATTTTTCAGATTACATTT
AAAAAAATATTATTACTGTAGTTATTATTACGTAACAAACAATGGCGTGGCATATACTTC
ACGGTCTGTTGGAACAGGTCAGAGTTCAATCTACATTTCCGGGCAAGTTATGGATCATTG
TAATGTTCATATTTCGAATCGTAGTTGTCGCGAGAATAGGAGACAACGTGTACCACGATG
AACAGGCAAATTTTGTTTGCAACGTGCTGACACCTGGTTGTGAAAATGTTTGTTTCAATA
GATTCAGTCCAATATCACAACTTAGATATTGGTCACTCATGATACTGGTTGTATCTACTC
CAGCTATATTATTTTTTCTCTACGCGACTCACGTGATCTATCACGCGGGAATCAAATATC
CATCGGAAGAAGATGACGAAAAAAAAGAGATTATGACGACACGATCAGATCAGTCGTATA
TTCATCCGCCGAGTTTAAAACGGCGGAGAGATGAGGGATTTCTGCCAAACGGGACAACGG
GTCCATTGTTCGAAGTTAAAAAGATCGGGAACGCGGACGGGAAATACAAAACAGCTAAAT
TCGGGAACAACAGGCGAAATGACGATATCAGGCGCAGACGTCATGTAATACGTTATGATG
GTGACGTCAAGAGAAAATTATCAACGGACAACAATGAATCGAATGAAGAAGTGTATATCG
ATTACAGAAACAAAGTTCCAATTTTCGTGGATCCTCACGGACAACGAGTTGAATTCATGA
AAGAAGTTCGAAGGAATCGTGCGGAAGATGACGCGATAGCAGAAAGAAAATTTCGGAAGA
GGATGTTGGAACATCCTGAACTATACAGAGCTTATTGGTGGCACGTGTTTCTACGAACAT
TATGCGAGGTTGGATTCCTCGTTGGTCAGTATTACTTATACGGTTGGTCAGTTCATGAAT
TATATGAATGTGATTATTGGCCTTGTCCAAAAACAGTCGATTGCTTCGTGTCAAGACCAC
AAGAAAAAACCTGTTTGTTATGGCTGATGTATGTTCTAGGTATAATCGCTTGTCTACTAA
GTGTCGCCGAGTTCTGGACTCTTGGTATCACTCGACTCAAGTACGCTTTCCTATGTTGTA
GCCATGATGAGTCGAGTGAAGAACGAAGACGAAGGCTCGCATTACTCGAGACACATTCAA
GTCATCACGATAAGAAAGAGAATGATCCACTTCACCCGAGACTTATCACGGGAGCAGTAA
GCTTTGACAGTTTGAGTAGCGATACTACTGTTGAGAGCGTTCATCCGTATCCGAACTCTT
ATTTCGTCACAATAGTAGGATGTTTTTATTTGAACATGACATGTTTTCTGCATTTTCTAT
GCACGTTTAAAAAAAATCATTTTTTGATGGAGAATTATTTAAGAGCAAATATTCTTGTAT
CTTTGCGGTAGAACCGTTGCTAATATTTGTATCCGGTAGATGGCGGTCGAGAGATTAGTT
TTCTACTGTATAAGTTCATACTTTTACACTATTGTTTTCGAATAATAATAAACCGAATTG
TTTTATGACTTCACAATATAATACACATCTTTTATATTTTCATGCATTAACAATGGAATG
ACGATGCTTTGTATAATTAACATTAAAACTTTGCAAAGGAGTATCATCCTGTATCATCTA
TTCAAGTGGTTCTTGACCATTTTCCCCTC
| PANTHER |
Connexin (IPR000500) - T[1-347] 7.2E-101 |
| Gene3D |
Connexin_N_sf (IPR038359) - T[1-139] 3.0E-38 - T[211-343] 8.1E-33 |
| Pfam |
Connexin_N (IPR013092) - T[3-335] 5.1E-79 |
| PRINTS |
Connexin (IPR000500) - T[20-44] 4.5E-19 - T[51-73] 4.5E-19 - T[76-96] 4.5E-19 |
| SMART |
Connexin_N (IPR013092) - T[42-75] 5.7E-11 |
| SMART |
Connexin_CCC (IPR019570) - T[268-334] 4.7E-33 |
| ProSitePatterns |
Connexin_CS (IPR017990) - T[290-306] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CXG1_HUMAN | 47.475 % | 119 | 1.45E-29 |
| CXG2_HUMAN | 46.078 % | 116 | 1.74E-28 |
| CXD3_HUMAN | 47.368 % | 108 | 1.66E-26 |