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TRANSCRIPT CARD

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  1. Transcript 'Harore.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S24.g13491.01.t

Possible name(s)

RPUSD2; RPUSD3; RPUSD4

Gene model

Harore.CG.MTP2014.S24.g13491

Location

S24 [304,519 / 309,465]

Sequences

Amino acid sequence

Length: 546

>Harore.CG.MTP2014.S24.g13491.01.p
MVHSLEKSALKPLPASTFPRVKYQGSVIVCKREFTVQYSISADIFDIIADSMIRIKNFSS
ISRSNTCSLFCRFLRTRRPTLPENVTSSESPSNKIEDEDILNLQSINTDRKHSTGNRFRK
EYNVNNTEEGRDIESANVDLEITELKIEETVKEKPKKYGIHIAKEMRKEKKEKETGTAEK
KEKKSVGLKPTDISRWDTVEAAKYLRKRVLYADKQLVILNKPYGIPAHDGDSVNMSLKSC
LPVLSKMIYGINTAIPLHLCNRLDKGTTGITVCAVDKDLGHRISDLFREQKVRRKYWCVT
VGVPSPLQGIVDIPLKVSHVEARRKGRDHTRMVLAPEQKLNYNSGDLVRTRSRKMNVALT
HYQVLDSNGGLALVELQPYSTAKHQLRVHTADGLNSPILGDHKYSRNDDLAPQSLPQYVL
RRFDIRQARSRDMPLHLHLREILIPDVLEDQEKSNLLVSAKLSEHLYQTCQLFRLKPGTS
TEFKYMPRLKKDVTGSRNPHIEELFVNPFADDDEQVSNELQQKDCYTVFKPRVKVRFQYS
NSEKTV

Nucleotide sequence

Length: 2,110

>Harore.CG.MTP2014.S24.g13491.01.t
ATGGTTCATAGCTTAGAAAAATCTGCACTTAAACCTCTCCCTGCGTCGACGTTTCCACGG
GTCAAATATCAGGGTTCAGTGATTGTGTGTAAACGAGAATTTACCGTGCAGTATAGCATC
AGTGCTGACATATTCGATATAATTGCGGACAGCATGATTAGAATTAAGAACTTCTCGTCT
ATTTCTCGCTCAAACACGTGCAGTTTATTCTGCCGATTTTTAAGAACTCGAAGGCCAACA
CTCCCCGAAAATGTGACCAGCAGTGAATCACCCTCGAATAAAATCGAAGATGAAGACATC
CTGAATCTCCAAAGCATTAATACAGATAGAAAGCATTCGACTGGAAACCGATTTCGAAAA
GAATACAATGTAAACAATACAGAAGAAGGAAGAGACATTGAAAGTGCAAATGTAGATCTG
GAAATAACGGAATTGAAAATAGAAGAGACAGTGAAAGAAAAACCTAAAAAATATGGAATT
CACATTGCCAAAGAAATGCGAAAAGAAAAGAAAGAAAAAGAAACTGGTACTGCGGAGAAA
AAGGAAAAAAAATCTGTAGGGCTTAAACCAACAGATATCAGCAGGTGGGATACAGTCGAG
GCCGCTAAATATCTCAGGAAGAGAGTTCTGTATGCTGATAAACAACTCGTCATCTTAAAT
AAACCGTACGGAATTCCTGCACATGATGGGGACTCTGTCAACATGAGCCTGAAATCCTGT
CTGCCAGTTCTATCTAAAATGATATATGGTATCAACACGGCGATACCTTTGCATCTTTGC
AACAGACTTGACAAGGGAACGACTGGTATCACGGTCTGCGCTGTCGACAAGGATCTCGGT
CATCGAATATCTGATCTGTTCCGAGAGCAGAAAGTTCGTAGGAAATACTGGTGTGTTACT
GTTGGTGTGCCTAGTCCACTTCAAGGAATTGTTGACATCCCGTTAAAAGTAAGTCATGTT
GAAGCTAGACGCAAGGGAAGAGATCATACGAGGATGGTCCTTGCACCAGAACAGAAACTA
AACTATAATTCTGGTGACTTGGTTCGAACACGTTCCAGAAAGATGAACGTAGCACTTACT
CATTATCAAGTACTGGATAGTAACGGCGGCCTCGCTCTAGTTGAACTGCAACCTTATTCA
ACTGCCAAACACCAGCTTCGTGTCCACACGGCAGACGGGCTCAATTCTCCGATTCTCGGC
GATCACAAATACTCCAGAAACGACGATCTCGCACCACAATCGCTGCCACAGTATGTGTTG
CGAAGATTCGATATTCGGCAGGCAAGAAGTCGAGACATGCCTCTGCATTTGCACCTCAGA
GAAATATTAATTCCAGATGTTCTGGAGGACCAAGAAAAATCTAACCTTTTAGTGTCTGCC
AAGTTATCAGAACACCTTTACCAGACCTGTCAGCTTTTTCGCCTGAAACCAGGAACTTCG
ACCGAATTCAAGTACATGCCAAGATTAAAAAAGGATGTCACTGGTTCGAGGAACCCTCAC
ATCGAGGAACTCTTCGTAAATCCATTCGCAGATGACGACGAACAGGTTTCGAATGAATTG
CAGCAAAAAGACTGCTATACTGTTTTTAAACCCAGGGTGAAAGTAAGGTTTCAGTACAGT
AACAGTGAAAAGACAGTTTAGCTAAATACTTGTTTGCATGAACATTAAAAATAGGGGCTA
TTTTACATATCACAATACTGAGCACAACTAGATGACATTCTAACTGTTACACAGTGAAAT
CAATGGCGATACCTATTTTTTCAGTAATTCTATCTTGAATATAGAATGTAGATTCAATTT
ACTCAAACTATGACTTCATCTATAGCATATATTTCCTCCCCCTCTTACTTCATTAATGCT
TCTCGATAAAGAATATATTTGAAGAAATTTAAGAAAAATACTTAAATAGAAATTATTGAA
GAGACGCCAAGATTAAAACGATAGCACAATATAGAAGTCAGGCAATAATGTGATAGTACA
CACATACAATTTTAATCCTTCATAAATTAAAATATTATATATGAAATATTTTAAAGCCAT
GAATGTTCATTGGCTTCATTTCCAATAAAAAATTTCTTACAAAATTCAATAAAACTTATA
GACTTTTAAA

InterProScan

SUPERFAMILY
PsdUridine_synth_cat_dom_sf (IPR020103) - T[204-475] 4.0E-39
CDD
PsdUridine_synth_RsuA/RluD (IPR006145) - T[216-418] 1.07099E-40
Pfam
PsdUridine_synth_RsuA/RluD (IPR006145) - T[216-391] 4.3E-25

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RUSD4_HUMAN 41.176 % 243 1.58E-75
RUSD3_HUMAN 28.571 % 84 1.6E-17