Aniseed - Transcript Card

Transcript Model

Transcript Id

Harore.CG.MTP2014.S240.g00084.01.t

Possible name(s)

RPAIN

Gene model

Harore.CG.MTP2014.S240.g00084

Location

S240 [132,065 / 132,734]

Sequences

Amino acid sequence

Length: 222

>Harore.CG.MTP2014.S240.g00084.01.p
MASLRNPDSATKHKNMYKLGSPPTWKDTYKRRCTDRLKSSRSKLLQKFRNITVETETNAT
DEADSSIVDDVMREEWNALQSEKGDLIFDSVLATLEEIKNELVLQEQEILVQYEKDREHE
EEALHSAVSHHENQCQNQIVCPICKSNYLEIKQNVIFCKCGLHVDTEQDCITLRHVDIQL
RVGSTSHLEKCHARPVFGVVDTFGTKNLLMSCNACDFMFIVI

Nucleotide sequence

Length: 669

>Harore.CG.MTP2014.S240.g00084.01.t
ATGGCGAGTCTCCGAAATCCCGATTCAGCGACTAAACACAAGAACATGTATAAATTGGGA
TCGCCACCTACTTGGAAAGATACTTACAAACGACGCTGTACTGACAGATTAAAAAGTAGC
AGATCTAAACTGCTTCAAAAATTCAGAAACATAACGGTAGAGACTGAAACAAATGCCACT
GACGAAGCAGATTCCAGCATCGTCGACGATGTTATGCGCGAAGAATGGAACGCACTGCAG
AGCGAAAAAGGCGACTTGATTTTCGATTCTGTTCTCGCAACGCTAGAAGAAATTAAGAAC
GAACTTGTGCTTCAGGAGCAAGAAATACTTGTGCAGTACGAAAAAGATAGGGAGCATGAA
GAGGAAGCTTTGCATAGCGCAGTATCACATCATGAGAATCAGTGTCAAAATCAGATCGTT
TGTCCGATATGTAAATCAAACTATTTAGAGATAAAACAGAACGTAATTTTTTGCAAGTGT
GGCCTTCATGTCGACACGGAACAGGATTGCATTACGTTGAGACACGTCGACATACAGTTG
CGAGTCGGAAGCACTTCTCATTTGGAAAAATGCCATGCCAGACCGGTCTTTGGGGTCGTG
GACACATTTGGAACAAAGAATTTGTTGATGTCCTGTAACGCTTGTGATTTCATGTTCATT
GTGATATGA

InterProScan

PANTHER	RIP (IPR028156) - T[6-222] 5.0E-55
Pfam	RPA_interact_N_dom (IPR028158) - T[13-50] 1.5E-13
Pfam	RPA_interact_central (IPR028155) - T[66-128] 4.7E-6
Pfam	RPA_interact_C_dom (IPR028159) - T[140-218] 3.5E-20

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RIP_HUMAN	34.632 %	128	7.14E-37