- Transcript 'Harore.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S23.g00056.01.t
Possible name(s)
SH3RF3; SORBS1; SORBS3
Gene model
Location
S23 [300,135 / 302,620]
Amino acid sequence
Length: 454
>Harore.CG.MTP2014.S23.g00056.01.p
MTDKQDMNKSTYKRPELQQSSVAGTDKNSKSSYIMAEYVKAEPKKTTVAASQNKPRVKSQ
EMRKAAKVKFDFVGSSDKQLTILKNQTIVVTRQVNNDWFEGESVDGKRTGIFPVAYVEIL
SESPMKPVRSGSAKAKFNFTGKDPKQLTIKKGDTVELLERVDKNWYKGRMGTVTGILPVN
YLEIIREPEQTQKTSSRSEPPPMTKTSNNNIAHKQTPSSSSDASSEADGFSILLIILIGY
LMHGCLVIFAKNVLLFLDKDKMTKASFLAQAAVSSGGTHLSAPKFRRGEFDIPELEDEAM
GIPSPKSNSDHTPQGSTDTTLSDLSSSVHSHTGSSHTFGKDTKENDDILPLEQSDENPLF
QTQRHITLYPFAPQNEDELELLAGDVVHVVEQCDDGWFVGTCERTNAVFGTLFSRRVRTN
QNLNFAIQFSAKLNMNVCIFIIYASRNLFSKLVV
Nucleotide sequence
Length: 1,365
>Harore.CG.MTP2014.S23.g00056.01.t
ATGACAGACAAGCAAGATATGAACAAGTCAACTTATAAGCGCCCAGAGCTACAGCAATCA
TCAGTAGCAGGTACAGATAAAAACAGCAAGTCAAGCTACATTATGGCTGAATATGTCAAG
GCTGAACCAAAGAAGACAACCGTTGCTGCAAGTCAAAACAAACCGAGAGTGAAATCGCAA
GAGATGCGTAAAGCAGCCAAAGTGAAGTTTGATTTTGTTGGCAGCTCAGACAAACAATTG
ACTATATTGAAAAACCAGACGATCGTGGTGACAAGACAGGTTAATAATGACTGGTTTGAA
GGGGAGTCTGTTGATGGAAAAAGGACTGGAATATTTCCTGTTGCTTATGTAGAGATCTTG
TCAGAATCTCCCATGAAACCAGTAAGGAGCGGATCAGCTAAAGCTAAATTTAATTTCACT
GGGAAGGATCCGAAGCAACTCACGATCAAAAAAGGCGACACGGTGGAACTGCTAGAAAGA
GTTGACAAAAACTGGTACAAAGGTCGTATGGGTACAGTGACTGGAATCCTTCCTGTGAAT
TACTTGGAAATCATACGTGAGCCTGAGCAAACCCAAAAAACTTCAAGCAGAAGCGAACCG
CCGCCGATGACAAAAACGTCCAACAACAATATAGCTCATAAACAAACTCCTTCCAGCAGT
AGCGATGCAAGCAGTGAAGCTGATGGATTTTCTATTTTACTCATCATTTTAATCGGTTAC
CTTATGCATGGTTGTCTAGTTATTTTTGCTAAGAACGTTCTTCTTTTTTTAGACAAAGAT
AAAATGACCAAGGCCTCGTTTTTAGCTCAAGCCGCCGTGAGTTCTGGTGGTACTCATCTC
AGTGCACCGAAATTTCGCAGAGGGGAGTTTGATATCCCTGAACTGGAGGATGAGGCAATG
GGAATCCCAAGCCCTAAAAGCAACAGCGATCACACTCCTCAAGGTTCCACTGACACAACT
TTGTCAGATTTATCAAGTAGCGTCCATAGTCACACTGGTAGCAGCCATACATTTGGAAAA
GACACTAAAGAAAATGATGATATTTTGCCGTTGGAACAGTCGGACGAGAACCCACTGTTC
CAAACACAAAGACACATCACGCTGTACCCTTTTGCTCCCCAAAACGAAGACGAATTGGAA
TTATTGGCAGGAGACGTGGTCCATGTGGTCGAGCAGTGCGATGACGGCTGGTTTGTCGGT
ACTTGTGAAAGAACAAATGCTGTATTTGGGACACTGTTCAGTAGGAGAGTTCGTACAAAT
CAAAATCTCAATTTTGCGATTCAATTCTCAGCTAAATTAAACATGAACGTATGTATATTT
ATTATTTACGCAAGTCGTAATTTGTTTTCCAAACTTGTAGTCTAG
| PANTHER |
Vinexin (IPR028510) - T[42-222] 5.8E-51 - T[351-411] 5.8E-51 |
| ProSiteProfiles |
SH3_domain (IPR001452) - T[61-122] 11.632 - T[128-187] 13.384 - T[360-422] 9.978 |
| SUPERFAMILY |
SH3-like_dom_sf (IPR036028) - T[64-128] 8.79E-16 - T[131-209] 7.22E-19 - T[362-408] 1.71E-12 |
| SMART |
SH3_domain (IPR001452) - T[64-121] 5.0E-13 - T[131-186] 4.0E-15 - T[363-421] 1.5E-8 |
| Pfam |
SH3_domain (IPR001452) - T[68-118] 1.1E-9 - T[134-178] 5.1E-10 - T[368-401] 3.3E-10 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SRBS2_HUMAN | 35.294 % | 98.2 | 9.73E-22 |
| VINEX_HUMAN | 37.931 % | 103 | 1.23E-23 |
| SRBS1_HUMAN | 35.417 % | 104 | 9.92E-24 |
