- Transcript 'Harore.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S236.g13376.01.t
Possible name(s)
ZIC2; ZIC3; ZIC4
Gene model
Location
S236 [144,126 / 147,032]
Amino acid sequence
Length: 618
>Harore.CG.MTP2014.S236.g13376.01.p
MKESENFNFSRPIDKAVHDSTYVTTHPVSYAYDNFYNPHDAAGAPVANNRQMLYHPSNSY
PSDTAGTKAHGLQVTNFYQSPYEICCNDPCKVAPHATFQSGRAISSEGFVQASSEDSYQD
NGYVSAQFDSNGKPISSNSNISMGYHQAPTALNFHSFHSFPPNKFYSPPQSMNDFYTFIR
PQQIHQQLGMCQSDYVCKWMYPANKQQLGKSTVPNEAPEVTEEPCNRVFVTLLDLVTHIS
LNHIGGSEQIDHTCYWQNCSRGKKSFKAKYKLVNHTRVHTGERPFSCPFPGCGKMFARSE
NLKIHKRIHTGERPFTCTFPGCDRRFANSSDRKKHSHVHTSDKPYTCKIKGCDKNYTHPS
SLRKHMRLHEAQGDVIHHQIDAECEKIDASNIPSSDSNNNIKRFCHSVSPGNLNTNSNIT
HIATSSMTSAPVSLTNFNSNLNQKSPKENMLYRPDGGDQNSYEIGKTAVTKMYTEPGVRA
GNGLFTEVLNTPLHAYSANDWYIYQTQRLGGMPTPPSEDRSQSNIATLCYKTSMRTEEIR
NTTLPYYYSDPIIHTLVHFFQRCLKFCTHITHWILFVIQRLLFARSPFCCRLYLHVPYII
NFIQSVYELSELVFFVLL
Nucleotide sequence
Length: 2,115
>Harore.CG.MTP2014.S236.g13376.01.t
AGCTCTGTTAACTGAATCCACGTGTGATTTTTGTGTTTTGCAATTAAATAATAAGATACG
ATGAAAGAATCTGAAAACTTTAACTTTTCTCGGCCCATCGATAAGGCTGTTCACGACAGT
ACCTACGTCACAACACATCCCGTGAGTTATGCATACGATAATTTTTACAATCCCCATGAC
GCTGCTGGAGCACCAGTAGCAAATAATCGCCAAATGCTTTACCATCCATCGAATTCATAT
CCAAGCGACACCGCCGGTACAAAGGCTCATGGCTTACAAGTGACAAATTTTTATCAGTCT
CCCTACGAAATATGCTGTAACGATCCGTGTAAAGTTGCACCCCACGCCACATTCCAAAGT
GGACGTGCTATTTCATCAGAGGGCTTCGTGCAGGCCAGCTCTGAAGACTCCTATCAAGAC
AATGGTTATGTCAGCGCACAGTTCGATTCAAACGGGAAACCTATTTCGTCGAATTCAAAT
ATTTCGATGGGATATCACCAAGCACCAACTGCACTCAATTTTCACTCGTTTCACTCTTTT
CCACCCAATAAATTTTATTCTCCACCACAATCGATGAACGACTTTTATACTTTCATCCGA
CCACAACAAATCCATCAGCAACTCGGCATGTGTCAGTCAGATTATGTATGCAAGTGGATG
TATCCTGCTAACAAACAGCAGTTGGGTAAATCAACTGTGCCGAATGAAGCACCGGAGGTC
ACAGAGGAGCCTTGTAATCGTGTTTTCGTAACGTTGCTAGACCTTGTAACACACATCAGC
TTGAATCACATTGGCGGATCGGAGCAAATCGACCATACTTGTTACTGGCAAAATTGCTCG
CGAGGAAAGAAAAGTTTCAAGGCAAAATATAAACTGGTCAATCACACTCGCGTTCATACA
GGTGAAAGACCGTTTTCTTGCCCCTTTCCTGGATGTGGAAAAATGTTTGCCCGCAGCGAA
AATTTGAAGATTCACAAAAGAATCCATACTGGAGAACGGCCGTTCACTTGCACTTTTCCA
GGATGCGATCGTCGTTTTGCAAATAGTTCTGACAGGAAAAAACACAGTCACGTACACACG
TCAGACAAACCATACACTTGCAAGATTAAAGGATGCGATAAGAATTATACGCATCCTAGC
TCCTTGCGGAAACACATGAGACTTCACGAGGCCCAAGGAGACGTTATCCATCATCAAATT
GACGCTGAGTGTGAAAAAATCGATGCATCGAACATACCTTCATCCGACAGTAACAATAAC
ATCAAACGGTTTTGTCACTCCGTGTCTCCGGGGAATCTCAATACGAACAGCAACATTACA
CATATTGCGACTTCATCTATGACGAGTGCCCCAGTTTCTCTCACAAATTTCAACAGCAAC
TTGAACCAGAAATCGCCGAAAGAGAATATGCTTTATAGACCAGATGGAGGCGACCAAAAT
AGCTACGAAATAGGAAAAACTGCCGTGACAAAAATGTACACAGAACCAGGAGTCAGAGCT
GGAAACGGACTCTTCACCGAAGTATTGAACACACCGTTACATGCGTACAGTGCTAACGAT
TGGTACATTTACCAAACCCAAAGACTTGGAGGAATGCCTACACCACCGAGCGAAGATAGA
TCGCAATCTAACATTGCTACACTCTGTTATAAAACTTCTATGAGGACAGAGGAAATTCGT
AATACAACTCTGCCTTATTATTATTCTGATCCAATAATCCACACGCTTGTACACTTTTTT
CAAAGATGCCTTAAATTTTGCACACATATAACACATTGGATATTGTTTGTTATTCAGCGT
CTTCTTTTTGCACGTTCACCATTTTGTTGTCGTTTATATCTTCATGTTCCCTATATTATT
AATTTCATACAGTCTGTTTATGAGCTGAGTGAGCTCGTTTTTTTCGTATTGCTGTGATGT
GTTGAAATTATAATATTGGCGATATTCTCTTATTTTATTTTTTTAATTTACCTTGTATTT
GGTAATAGAATTTTAATTGAAAGGATTGCAAATTCGCTTACTTCTTCGCTATAGAGTATA
GATCCTAATTAGGCGAAACCAAGCAGATATACTAAAAGCAAAGGGAAATATTCTCATTAA
AATGCAAATCCATGA
| SMART |
Znf_C2H2_type (IPR013087) - T[252-279] 9.3 - T[285-309] 1.8E-4 - T[315-339] 0.025 - T[345-369] 1.7E-4 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[257-284] 11.531 - T[285-314] 16.54 - T[315-344] 12.902 - T[345-374] 11.655 |
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[265-321] 4.89E-19 - T[330-370] 1.37E-10 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[287-309] . - T[317-339] . - T[347-369] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ZIC4_HUMAN | 59.113 % | 254 | 1.4E-79 |
| ZIC2_HUMAN | 60.914 % | 257 | 4.38E-78 |
| ZIC3_HUMAN | 56.14 % | 261 | 2.27E-80 |