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TRANSCRIPT CARD

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  1. Transcript 'Harore.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S2354.g13265.01.t

Possible name(s)

PABPC4; RBM39; TRNAU1AP

Gene model

Harore.CG.MTP2014.S2354.g13265

Location

S2354 [0 / 1,713]

Sequences

Amino acid sequence

Length: 178

>Harore.CG.MTP2014.S2354.g13265.01.p
PSFSIFVGDLDTTITDDKLEDFFLQKYRSVKGGKVMFDEHGESRGYGFVRFSDEAEQKKA
LIEMQGACGLGSRPIKVSHATPKNKPPSSTTTAASPTDQTSFSATQQQQQWWQQYQDYQY
YQQYYNYYNYQQPNYYNQQATYGNTQQAQYGTQQNNTTANTMQARKLAEKLEGLSRFL

Nucleotide sequence

Length: 536

>Harore.CG.MTP2014.S2354.g13265.01.t
GCCATCTTTCTCGATCTTTGTCGGAGATCTTGACACAACAATAACCGATGACAAACTGGA
AGACTTTTTTTTGCAAAAGTATAGATCTGTGAAAGGAGGAAAGGTAATGTTTGATGAACA
TGGAGAATCGAGAGGATACGGGTTTGTGAGATTTAGTGACGAGGCGGAGCAGAAGAAGGC
GCTGATTGAAATGCAAGGAGCTTGTGGACTTGGTTCTCGGCCGATTAAAGTCAGTCATGC
GACGCCAAAAAATAAACCTCCGTCTTCGACCACAACGGCCGCATCTCCAACGGATCAAAC
GAGTTTTTCTGCTACTCAACAACAGCAGCAGTGGTGGCAGCAATATCAAGATTATCAGTA
CTACCAACAATACTATAATTATTATAACTACCAGCAACCAAACTATTACAATCAGCAGGC
AACTTACGGAAACACGCAACAGGCCCAATACGGCACGCAGCAGAATAACACGACAGCGAA
TACAATGCAAGCTAGGAAGCTTGCTGAAAAATTGGAAGGTTTGTCTAGATTTCTTC

InterProScan

SUPERFAMILY
RBD_domain_sf (IPR035979) - T[1-88] 1.1E-20
Gene3D
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[2-79] 5.3E-22
ProSiteProfiles
RRM_dom (IPR000504) - T[3-82] 16.637
SMART
RRM_dom (IPR000504) - T[4-78] 1.1E-14
Pfam
RRM_dom (IPR000504) - T[5-73] 1.5E-14

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
TSAP1_HUMAN 55.422 % 105 3.5E-28