- Transcript 'Harore.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S22.g11242.01.t
Possible name(s)
ZFP36; ZFP36L1; ZFP36L2
Gene model
Location
S22 [73,091 / 74,505]
Amino acid sequence
Length: 391
>Harore.CG.MTP2014.S22.g11242.01.p
MFRALLHLGENLDFGFPYSADTTSMSPVGAFDKIAPINNVSLNGMWSTQTPAGVHRRNST
SSVSSSASIRNRMNMNSLTSVANIIPETATITAATATIFNSVSEERFRSRAYSEGASSLS
IDQQQPQQQPLASSRYKTELCRPFEENGKCKYGDKCQFAHGKQELRQLIRHPKYKTELCR
RFHTSGLCPYGPRCDFIHNQEDLGNRMPTNMQSSSTMHQTSHQTAYNHGISSQPGMPIPV
PSPHVSERNHFNHRPSQLTVLTKQLSCGPILGGMSYSPTNQSPGGSPTFYQRNSDLECST
LLSPTSPNAGKQIMFNFNVPTTNSLMYEQSTPPMSNYDMFSTQGCIQDAPVADDAFSSPP
TPPDSDRESMTGSPPSRQQRLPIFRCLSQSD
Nucleotide sequence
Length: 1,287
>Harore.CG.MTP2014.S22.g11242.01.t
ATGTTCCGCGCGTTATTGCATTTAGGCGAAAATCTGGATTTTGGATTTCCCTACTCCGCT
GATACTACAAGCATGTCGCCGGTCGGCGCATTCGACAAAATCGCACCGATAAATAACGTC
TCTTTGAACGGCATGTGGTCAACTCAAACACCGGCCGGTGTTCATCGACGAAATTCCACC
TCGTCTGTTTCTTCAAGTGCGTCCATTAGGAATCGAATGAACATGAACTCGTTAACGTCA
GTTGCTAATATCATCCCCGAGACTGCAACCATTACGGCAGCGACGGCGACAATCTTTAAT
TCTGTGTCGGAGGAGAGATTCCGTAGTCGGGCATACAGTGAAGGTGCCAGTTCCCTTTCC
ATTGACCAGCAACAACCGCAACAACAGCCTTTAGCTTCAAGTCGTTATAAAACCGAACTG
TGTAGACCTTTTGAGGAAAATGGAAAGTGCAAGTATGGAGATAAGTGTCAATTTGCTCAT
GGTAAACAAGAGCTACGCCAACTAATCAGGCACCCAAAGTACAAAACCGAACTATGCCGC
AGATTCCACACCAGCGGATTGTGTCCATATGGTCCACGATGTGATTTCATTCACAACCAA
GAGGATTTGGGCAATCGTATGCCAACAAACATGCAGTCTTCCAGTACAATGCACCAAACT
TCACACCAAACCGCCTACAATCACGGAATCTCCTCGCAGCCGGGCATGCCCATCCCTGTC
CCTTCTCCTCATGTGTCGGAAAGAAACCATTTCAATCACAGACCATCCCAGTTGACAGTT
CTAACCAAACAGCTGAGCTGCGGACCAATATTGGGCGGCATGTCCTACTCTCCCACGAAC
CAGAGTCCCGGTGGTTCTCCCACTTTCTACCAGCGGAACAGCGATTTGGAATGTTCAACC
CTTCTTTCACCAACTTCGCCTAATGCTGGGAAGCAAATCATGTTCAATTTCAACGTTCCC
ACGACCAACAGCCTCATGTACGAGCAGTCCACTCCACCGATGTCCAATTATGATATGTTT
TCGACTCAGGGATGTATTCAGGATGCGCCAGTGGCAGACGATGCTTTTAGCAGTCCACCC
ACTCCACCAGATTCAGACCGTGAATCTATGACTGGGTCGCCACCCTCGAGACAGCAGCGC
CTTCCCATATTTCGCTGTCTGTCCCAGTCCGACTAAGACTATTTCATGGACTTGATTTTC
TTTACTACTGAGACAACATGTCTACCTAGCAGGAAAACTTTTCTCACGCTTAAAATCGTG
AATCCCAAGTCCCAAAAATTTGTATAA
| Pfam |
Tis11B_N (IPR007635) - T[47-125] 5.5E-5 |
| ProSiteProfiles |
Znf_CCCH (IPR000571) - T[135-163] 17.262 - T[173-201] 15.676 |
| SMART |
Znf_CCCH (IPR000571) - T[135-162] 3.1E-9 - T[173-200] 3.8E-8 |
| SUPERFAMILY |
Znf_CCCH_sf (IPR036855) - T[135-166] 3.4E-10 - T[169-204] 3.92E-10 |
| Pfam |
Znf_CCCH (IPR000571) - T[136-162] 5.3E-11 - T[174-200] 1.2E-9 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TISB_HUMAN | 51.765 % | 159 | 2.56E-45 |
| TISD_HUMAN | 60 % | 134 | 5.33E-35 |
| TTP_HUMAN | 71.429 % | 114 | 1.19E-28 |