Login
Help

TRANSCRIPT CARD

Submit your Data

  1. Transcript 'KH2012:KH.C3.100.v1....' > 
  2. Transcript 'Cisavi.CG.ENS81.R9.2...' > 
  3. Transcript 'KH2012:KH.C1.237.v1....' > 
  4. Transcript 'KH2012:KH.C1.237.v1....' > 
  5. Transcript 'Harore.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S22.g11128.02.t

Possible name(s)

SDC1; SDC2; SDC4

Gene model

Harore.CG.MTP2014.S22.g11128

Location

S22 [288,107 / 291,406]

Sequences

Amino acid sequence

Length: 214

>Harore.CG.MTP2014.S22.g11128.02.p
MVPSRKFFILFVFLCLSSAAMSYADAEDKSFYFDGDGSGDGNHISTEFPTDDEDIDEGSG
KPDLVNIDVSESIIPVKSGPKKINEEPIEIEPIEKNIARDDGTNEEVKSEPGIGVGVAGA
ASMHFIAAIVVGGCIGLLFAVCVVMLLVYRMRKKDEGSYALEYGLDKKPQGAYEYTKGVD
SKEYFAAESMFLLSTVNERTPHSFSFTSILLRFC

Nucleotide sequence

Length: 1,450

>Harore.CG.MTP2014.S22.g11128.02.t
AGAAAAAACATCTAAGAACTACCACATAGTGTGTCAGCTGATAGTTGAACGTTTATTTTC
ATTCACGGGTGGAATTACAAACAGTGAAGTAACGAACAGGAGATTTGTTGGATAATATTA
CACGGAAATATGGTTCCCTCACGAAAGTTCTTCATACTTTTTGTTTTCTTATGTTTATCG
TCTGCGGCCATGAGTTATGCTGATGCTGAGGATAAGTCTTTTTATTTCGATGGTGACGGC
TCAGGAGATGGAAATCACATCAGTACTGAGTTTCCTACAGATGATGAAGATATTGATGAA
GGATCAGGTAAACCTGATTTGGTGAATATAGATGTATCGGAGAGTATTATTCCTGTTAAA
TCCGGACCAAAAAAAATAAACGAAGAACCAATTGAAATTGAGCCGATCGAGAAAAACATA
GCTCGTGATGATGGAACGAATGAAGAGGTCAAATCTGAACCAGGAATAGGCGTTGGCGTT
GCTGGGGCGGCCAGCATGCATTTTATCGCAGCAATCGTCGTAGGTGGATGCATAGGTCTT
TTGTTTGCGGTGTGTGTCGTCATGCTCCTTGTTTATCGCATGCGGAAAAAAGACGAAGGA
AGCTATGCTCTCGAGTATGGTTTGGACAAGAAACCTCAAGGTGCATACGAATATACTAAA
GGTGTCGACAGTAAGGAGTATTTCGCAGCAGAGAGTATGTTCTTATTATCTACTGTAAAT
GAAAGGACGCCACATAGTTTCTCCTTTACTTCTATTCTTTTACGCTTTTGTTAAAGCTCA
ATGAGGTTCGACTTTCAGTTTTGTTGTTGCTTGTTATGACATACTGTAGTCCTGTTATGT
TAAATCCACGGTCTTTAGATTACTTTGTATCTTGTTTTCTTTATTTAATTAGAACCTCTT
TACAAATAGTGGTTTTAAAAGCCAGTAAATAACTATCGTGAACCTCATTGTACCAACCTT
TTTTTTTTCTCACCACTCTGTATTTCTGCAGAACAGACACTATTTTGTGTTGTAAATTTC
ATGATATTCGACAAATGGATTATATCCAAGTTACTGGAGTCTGTCATGTTCAGTCACAGA
AAATCTGTACAAAGTTATGTAATCTTTTCCCTTTCTATGTATAATATCATATCTTCAAAC
AAATACTTAACCCAAGTTTGTTAGATGTGTTGTGTTTGAGTAGATTTTAATCCCATTTTT
AATAAGATCTACTTTTCTATTAATTTTGAAGCTAAAAACTGCTCTTCCAGCTACCTAATA
ATTTTATAATAGACCCAGGTCTTCTCCCCAAGAGAACCTCTCAATTATGTATACAGAATG
TGATTTTAATCTCAAGACCAGAATATTACATAACCTGAATCTTTCCGACAAGTTATAAAG
CTTGTTTTTTATATGTACCTCTTGTACTGGAGAGTAAGTATTGTTTTTAATAAAATTCTG
ATATAAGCTA

InterProScan

PANTHER
Syndecan (IPR001050) - T[13-72] 1.1E-23 - T[125-186] 1.1E-23
Pfam
Syndecan/Neurexin_dom (IPR027789) - T[123-178] 3.5E-20
ProSitePatterns
Syndecan_CS (IPR030479) - T[149-159] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value