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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C4.276.v1....'
  2. Transcript 'NCBI:KH.XM_018814128...'
  3. Transcript 'Harore.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S22.g11128.01.t

Possible name(s)

SDC1; SDC2; SDC4

Location

S22 [288,783 / 291,217]

Sequences

Amino acid sequence

Length: 316

>Harore.CG.MTP2014.S22.g11128.01.p
MSYADAEDKSFYFDGDGSGDGNHISTEFPTDDEDIDEGSGRFVDDPLSTSSDEMTVTTVV
LLPTSKPYNQSSVLFDDEAQLYTKTELPSTTTKTSVPPLVAVESEPKVADTEVAQPSTSS
GSVFTSRPDVPATSTIATTALSRILLETEISQTSKIDVKTLGKPDLVNIDVSESIIPVKS
GPKKINEEPIEIEPIEKNIARDDGTNEEVKSEPGIGVGVAGAASMHFIAAIVVGGCIGLL
FAVCVVMLLVYRMRKKDEGSYALEYGLDKKPQGAYEYTKGVDSKEYFAAESMFLLSTVNE
RTPHSFSFTSILLRFC

Nucleotide sequence

Length: 951

>Harore.CG.MTP2014.S22.g11128.01.t
ATGAGTTATGCTGATGCTGAGGATAAGTCTTTTTATTTCGATGGTGACGGCTCAGGAGAT
GGAAATCACATCAGTACTGAGTTTCCTACAGATGATGAAGATATTGATGAAGGATCAGGC
CGTTTTGTTGACGACCCACTTTCGACCTCATCGGACGAAATGACAGTTACCACTGTGGTA
CTTTTACCGACTTCGAAACCTTACAATCAATCTTCTGTACTTTTTGATGACGAAGCTCAG
CTATACACTAAAACTGAGCTGCCTTCAACTACTACAAAAACGTCTGTTCCTCCTTTGGTA
GCAGTCGAAAGTGAGCCGAAAGTTGCAGATACAGAGGTAGCTCAACCTAGCACGAGTTCT
GGCAGTGTGTTCACATCAAGGCCTGATGTACCTGCGACTTCGACTATTGCTACTACGGCT
TTATCCAGAATTTTGTTAGAAACAGAAATATCTCAAACGTCGAAGATTGATGTTAAAACA
CTAGGTAAACCTGATTTGGTGAATATAGATGTATCGGAGAGTATTATTCCTGTTAAATCC
GGACCAAAAAAAATAAACGAAGAACCAATTGAAATTGAGCCGATCGAGAAAAACATAGCT
CGTGATGATGGAACGAATGAAGAGGTCAAATCTGAACCAGGAATAGGCGTTGGCGTTGCT
GGGGCGGCCAGCATGCATTTTATCGCAGCAATCGTCGTAGGTGGATGCATAGGTCTTTTG
TTTGCGGTGTGTGTCGTCATGCTCCTTGTTTATCGCATGCGGAAAAAAGACGAAGGAAGC
TATGCTCTCGAGTATGGTTTGGACAAGAAACCTCAAGGTGCATACGAATATACTAAAGGT
GTCGACAGTAAGGAGTATTTCGCAGCAGAGAGTATGTTCTTATTATCTACTGTAAATGAA
AGGACGCCACATAGTTTCTCCTTTACTTCTATTCTTTTACGCTTTTGTTAA

InterProScan

PANTHER
Syndecan (IPR001050) - T[18-288] 3.7E-27
Pfam
Syndecan/Neurexin_dom (IPR027789) - T[225-280] 4.5E-20
ProSitePatterns
Syndecan_CS (IPR030479) - T[251-261] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value