- Transcript 'Harore.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S22.g05991.01.t
Possible name(s)
ZIC3; ZIC4; ZIC5
Gene model
Location
S22 [345,105 / 346,512]
Amino acid sequence
Length: 468
>Harore.CG.MTP2014.S22.g05991.01.p
MAYATAYAFSHQAPTAPFPGYTSTGYENVLPQPMHGITSPGSQAALYNPHLNVAPLRNRQ
NIQNPTYINPPSQLKTDSQFFTGVHQPFDYSYRNQYLAYGGGQAQTTQKGLTCKWIVSGK
SGEENAITCDREFYSMNQLVDHVTVDHVGGHDQADHTCYWKDCTREKSFQAKYKLVNHIR
VHTGEKPFICLFPNCGKVFARSENLKIHKRTHTGEKPFVCPFDGCDRRFANSSDRKKHTY
THSTSKPYACKVQGCKKSYTHPSSLRKHLKMHEAEGIKVESDGGSSDSRMTSPTSSNGSS
SSNNAESGVSPKSPTDNVLTGSISPRSSGSNNGSEINSFAPPNIDLGRDLGVCSGVKFEP
QPGFRTNNPFPYYEVQGSTTVGTLPSNSPFYPAATATQHLSSIAESVATHTPYNAGYYHQ
PSAPTYMMHPQHTPMESEVQAPSIKYLPATEMYESYPSAGYSNHFHQF
Nucleotide sequence
Length: 1,407
>Harore.CG.MTP2014.S22.g05991.01.t
ATGGCATACGCAACAGCTTACGCTTTCTCCCATCAAGCACCGACTGCTCCTTTCCCCGGA
TACACATCAACTGGTTACGAGAACGTATTACCGCAACCAATGCATGGTATCACCTCTCCG
GGATCTCAAGCAGCTCTTTACAATCCTCACCTGAACGTTGCTCCTCTTAGAAACCGACAA
AATATTCAGAATCCGACTTATATCAACCCACCATCTCAGCTTAAAACGGATTCTCAATTC
TTTACCGGAGTTCACCAACCCTTCGACTACTCCTACAGGAACCAGTATTTGGCGTACGGT
GGCGGACAAGCACAGACTACCCAGAAAGGTCTGACTTGCAAATGGATCGTAAGCGGGAAA
AGCGGCGAAGAAAACGCGATAACCTGCGACAGAGAGTTTTACAGCATGAACCAACTAGTT
GACCACGTAACCGTTGACCATGTAGGAGGACACGACCAGGCCGACCACACTTGTTACTGG
AAGGACTGTACAAGAGAAAAATCCTTCCAGGCTAAATATAAATTAGTCAACCATATTCGA
GTTCATACTGGAGAAAAACCATTCATCTGCTTGTTCCCCAACTGCGGCAAAGTTTTCGCT
AGAAGCGAGAATTTGAAAATTCACAAACGTACCCATACGGGAGAAAAGCCATTCGTTTGT
CCTTTCGACGGCTGCGATAGAAGATTCGCGAACAGCTCCGACCGTAAAAAACATACCTAC
ACTCACTCTACGTCCAAACCGTATGCATGCAAAGTACAAGGATGTAAAAAGAGCTACACC
CATCCCAGCTCTCTCCGAAAACATTTGAAAATGCATGAAGCCGAGGGGATTAAGGTAGAA
AGCGACGGAGGAAGCAGCGATTCCAGAATGACGTCCCCAACATCCAGTAACGGATCGTCG
AGCAGCAACAACGCGGAATCTGGTGTATCGCCTAAATCGCCAACAGACAATGTGTTAACC
GGATCCATTTCTCCCCGTTCCAGTGGTAGTAACAATGGATCTGAAATCAATTCCTTTGCT
CCACCAAATATCGATCTCGGAAGAGATCTTGGCGTTTGCTCAGGTGTCAAATTCGAACCC
CAACCGGGTTTTCGAACGAACAACCCATTTCCATATTACGAAGTTCAAGGTTCGACGACA
GTAGGTACCCTTCCGTCAAATTCGCCATTTTATCCTGCAGCTACAGCGACACAGCATTTG
TCGTCCATTGCAGAATCCGTGGCAACCCACACTCCTTACAACGCTGGATATTACCATCAA
CCATCTGCTCCGACATACATGATGCATCCGCAGCATACTCCCATGGAGTCTGAAGTTCAA
GCTCCTTCAATCAAATATCTTCCGGCTACAGAAATGTATGAATCCTATCCTAGTGCCGGG
TATTCCAATCACTTCCATCAGTTTTAA
| SMART |
Znf_C2H2_type (IPR013087) - T[127-147] 260.0 - T[156-182] 5.2 - T[188-212] 0.0043 - T[218-242] 0.0043 - T[248-272] 5.0E-4 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[156-187] 10.907 - T[188-217] 16.249 - T[218-247] 11.739 - T[248-277] 11.427 |
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[168-224] 6.72E-20 - T[233-273] 1.02E-9 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[190-212] . - T[220-242] . - T[250-272] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ZIC4_HUMAN | 59.091 % | 249 | 3.54E-79 |
| ZIC3_HUMAN | 62.814 % | 255 | 5.43E-80 |
| ZIC5_HUMAN | 61.29 % | 248 | 5.12E-75 |
