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TRANSCRIPT CARD

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  1. Transcript 'Harore.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S227.g06533.01.t

Possible name(s)

CEP78; LRRC45; NLRC3

Gene model

Harore.CG.MTP2014.S227.g06533

Location

S227 [115,190 / 123,714]

Sequences

Amino acid sequence

Length: 696

>Harore.CG.MTP2014.S227.g06533.01.p
MSLIPENIVSRHRGAYDFETHYCNQCALQDTVPLIEVKAHLQQGVLDINSDKIRLGDWPP
ILNTLRINKSLRFIAIRSFYSQSVDKDGRVKKSHYFKRRPPAIRSKDLTLRLSQVIGECI
KVTENLKCLDLQGIPFREKDLISLAKGLNRNSTITHLSLEYCCMGDVGCEIISESVKHHS
ALSHLNYSGCNLTWKSSETIANLIKHQSTERHSEAWVDSLRYRQPNLDSMTGLRRITLNS
NPMIGDEGMSVLADALKDDLWLKALDLQKCGIGRNGGNVLLEMLKQNKTLVVLDIRFNPL
IDRHLLHGLLGQVLINSNGYDEKDFPWIAAEPPKDPYHTRPRRRSKQIGSGYGKKTTIKL
GSRASPKLSRPPESDWREVSPGNKGFVPWRTAYRASQYKMVYNTKEKIGTPRYLQNAEIG
HVTIQVEESESEEDDNEDVPLSLASPERASSKQRDLMPASPVTVAIKSYDQKIRRMKIDV
LEARRSMMEERKARQLAEQHALNLEVDNERLKRELVEERAVNGMQSVLDDESLLESIETS
FNKFHSFLDLLKQLGLGGLVAYAGMSDMQFPLGKNDKKSSESGNPTLSHKLDEGRGDSQY
HSKKLTKKKSYERRDDSEVEPDEVSAPPPITFHSKTTSREGKQKNTETGEVPKQGSRASG
RQKTQESVDKSGASDDIDNDDSTSNTGAGGDGLRSK

Nucleotide sequence

Length: 2,091

>Harore.CG.MTP2014.S227.g06533.01.t
ATGTCGTTAATTCCGGAAAATATTGTATCAAGACATCGAGGTGCCTATGATTTCGAAACC
CATTACTGCAACCAGTGTGCCTTGCAAGACACCGTCCCACTAATTGAAGTTAAGGCTCAT
TTACAACAAGGTGTATTGGATATCAACAGTGATAAAATCAGACTAGGTGATTGGCCTCCT
ATTCTTAACACCCTGCGAATAAATAAAAGTCTTCGATTCATTGCCATTCGAAGTTTTTAT
TCGCAGTCTGTCGACAAAGATGGCCGTGTCAAGAAATCGCATTACTTCAAAAGACGACCT
CCTGCGATAAGGTCCAAAGATCTTACCCTCAGATTATCCCAGGTGATCGGTGAGTGCATA
AAGGTCACAGAAAATCTGAAATGCCTCGATCTACAGGGAATTCCATTCAGAGAAAAAGAT
TTGATTTCACTCGCAAAGGGTTTGAACCGAAATTCCACCATAACTCATCTTTCACTCGAA
TACTGCTGCATGGGAGATGTTGGATGTGAAATCATTTCTGAATCTGTGAAGCATCATTCT
GCTCTTTCTCATTTGAATTATTCCGGTTGTAATTTGACATGGAAGAGTTCGGAAACTATT
GCCAATCTTATCAAGCATCAATCGACAGAGCGTCACAGCGAGGCTTGGGTAGATAGTCTG
CGGTACCGGCAGCCAAATCTGGACAGCATGACCGGACTAAGAAGAATTACGCTCAACTCT
AATCCAATGATTGGAGATGAAGGCATGTCGGTTTTAGCAGATGCTTTGAAGGATGATCTC
TGGCTCAAAGCTCTGGATCTTCAAAAATGTGGAATTGGCAGGAACGGTGGAAATGTTCTC
TTGGAAATGTTGAAGCAAAACAAAACTCTCGTGGTTCTTGACATCAGATTCAATCCACTT
ATAGATAGACATCTTTTGCATGGGCTCCTCGGTCAAGTTTTGATTAACTCAAATGGTTAT
GACGAAAAGGATTTTCCCTGGATCGCAGCTGAACCACCGAAAGATCCCTACCATACTCGG
CCACGCAGGAGGTCGAAGCAAATAGGTAGTGGCTATGGGAAAAAAACGACTATCAAACTT
GGGAGTCGGGCATCACCAAAACTTAGCAGACCGCCTGAATCGGACTGGCGTGAGGTCTCT
CCTGGTAATAAAGGGTTCGTACCCTGGAGAACAGCATACAGGGCTTCACAGTATAAAATG
GTTTACAACACGAAGGAAAAAATTGGCACGCCAAGATACCTGCAGAATGCCGAGATTGGA
CACGTAACAATTCAAGTTGAAGAATCCGAAAGCGAAGAAGATGATAATGAGGATGTTCCT
TTATCTTTGGCATCTCCCGAACGAGCCTCGTCAAAGCAAAGGGATTTGATGCCTGCGAGC
CCGGTGACTGTTGCGATTAAAAGTTATGACCAAAAAATTCGACGAATGAAGATTGATGTA
TTGGAAGCAAGAAGATCAATGATGGAGGAGAGAAAAGCCAGACAGTTGGCCGAACAACAC
GCTCTCAATTTAGAAGTTGATAATGAGAGATTGAAAAGAGAACTGGTGGAGGAACGGGCT
GTTAACGGCATGCAATCTGTTTTAGATGACGAGTCGTTGCTGGAAAGCATAGAAACATCG
TTCAACAAGTTTCACAGCTTTCTAGATTTACTGAAGCAGCTAGGGCTGGGAGGTTTGGTA
GCTTATGCTGGAATGAGTGACATGCAATTCCCACTGGGAAAAAATGACAAAAAGTCATCT
GAATCAGGCAATCCCACATTGAGTCACAAACTGGATGAAGGCAGAGGTGATTCACAATAT
CACAGCAAAAAATTAACCAAGAAAAAATCATACGAACGAAGAGACGATTCAGAAGTTGAA
CCGGATGAAGTTTCGGCTCCACCTCCGATAACTTTTCACAGCAAAACTACCTCTCGTGAA
GGGAAGCAGAAAAATACTGAAACCGGTGAAGTACCAAAGCAAGGGAGTCGAGCAAGTGGC
CGCCAGAAAACACAAGAAAGTGTGGATAAATCTGGTGCATCTGATGATATTGATAATGAT
GACTCAACCTCCAATACTGGAGCTGGAGGGGATGGATTACGATCAAAATAA

InterProScan

Gene3D
LRR_dom_sf (IPR032675) - T[18-222] 1.6E-21 - T[224-310] 7.9E-16
Pfam
Leu-rich_rpt (IPR001611) - T[151-170] 0.022 - T[232-253] 0.67
PRINTS
Cep78 (IPR026212) - T[169-190] 2.2E-20 - T[192-207] 2.2E-20 - T[216-234] 2.2E-20 - T[254-273] 2.2E-20

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
CEP78_HUMAN 38.963 % 395 2.86E-128