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TRANSCRIPT CARD

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  1. Transcript 'Boleac.CG.SB_v3.S60....' > 
  2. Transcript 'Moocci.CG.ELv1_2.S29...' > 
  3. Transcript 'KH2012:KH.C8.477.v1....' > 
  4. Transcript 'KH2012:KH.L147.2.v1....' > 
  5. Transcript 'Harore.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S221.g14603.02.t

Possible name(s)

BCL2L2-PABPN1; PABPN1; PABPN1L

Gene model

Harore.CG.MTP2014.S221.g14603

Location

S221 [29,987 / 32,725]

Sequences

Amino acid sequence

Length: 240

>Harore.CG.MTP2014.S221.g14603.02.p
MSDILDQDNSLDGLNSHDGDSLGVDDSAILDHSTADISQNADSIVEDPELEAIKARVKEM
EAEAEKLKEMQNEVEKQISLSPTQATGAVAFPSIEEKVEADARSIYVGNVDYGATAEELE
QHFHGCGSVNRITILCDKFSGHPKGFAYIEFVDKESVETSVALDGSLFRGRQIKVNPKRT
NKPGFVFMERGGGGGRPRGRPRYRARGYYYPRPRRAYSKSDVLFTILKKSAVSCKLIYTF

Nucleotide sequence

Length: 1,343

>Harore.CG.MTP2014.S221.g14603.02.t
AGACTCTACTTGTCGTATTTAAGTTAACGAAAAAGTCATGTCAGACATTCTTGATCAAGA
TAATAGTTTAGATGGTTTGAATTCTCATGATGGAGATTCCTTGGGTGTTGATGATTCCGC
GATACTGGATCACTCCACAGCAGATATCTCACAAAATGCAGACAGCATAGTTGAAGATCC
TGAGCTTGAAGCAATTAAAGCCCGAGTTAAGGAAATGGAAGCTGAGGCAGAGAAGTTAAA
AGAAATGCAAAATGAGGTTGAAAAACAAATAAGTTTGAGTCCAACTCAAGCAACCGGAGC
TGTTGCCTTTCCATCCATTGAAGAAAAAGTCGAAGCAGATGCAAGATCAATTTACGTTGG
AAATGTCGACTATGGGGCTACAGCAGAGGAATTAGAGCAACATTTTCACGGATGTGGTTC
AGTAAATAGAATAACCATATTATGTGATAAATTTTCTGGACATCCGAAAGGGTTCGCCTA
CATTGAATTTGTCGATAAAGAGTCGGTGGAAACTTCGGTAGCGCTGGATGGCTCACTTTT
TAGAGGAAGACAAATTAAGGTCAATCCCAAACGGACAAACAAACCTGGATTTGTATTCAT
GGAGCGTGGTGGTGGCGGTGGAAGGCCACGTGGACGACCTCGGTATCGTGCTAGAGGTTA
TTATTACCCGAGACCACGTAGAGCCTACAGTAAGAGCGACGTATTATTCACCATACTGAA
AAAATCAGCGGTGTCTTGTAAGTTGATTTATACTTTTTGACATTACCCAATTGCCTGTTC
AGTCATATTAACATTTTATTGTAATTTTATTTACTTGACTTGGGAATTTTTAAGTTTTAC
ATTACGGACTCTGTCGTACAAGTTTTATTCATAGAACATTGTTAAATTATATGTAGGCAT
TTCTCTGTTTTGCTTTGGTTTCGTTTGTTTTTTTTTGTTCGACTTGTGCTGAAAATTGAC
CAGCGGTATCTTGTTTTCAATCTTGTGATACATGCTTCGGTAAGAACACTACCACTTCTG
GGTAAGTAGGATTCCAATGCTTTAAGTTTATGATCTTGTGAACTGAAAAAAAAATGAAAA
AAGAGAAAAGAAAGAAAAACAAATCCACAAATAAGAAAACATTGAATAAAAAAAGAGGAA
AATATGAAATAAAAATATGGATGAAGAAACACAAAAAGAGGAACATGAAAAAAAATCAGC
ATGTTGATTAAAATCCATGCTAATAAAGACAGAAGATTGTGGAATAAAAATACTTCATTG
TTATACTGGGTTGTATTATCCTCTGATGCTTTATTAGAAGACAAGTTTACAGCTCCTTAG
CAGTAAATAATTTTTGTTCACAA

InterProScan

PANTHER
PABP2 (IPR034911) - T[18-211] 2.1E-92
SUPERFAMILY
RBD_domain_sf (IPR035979) - T[95-207] 9.17E-30
Gene3D
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[97-185] 3.1E-25
ProSiteProfiles
RRM_dom (IPR000504) - T[103-180] 17.097
SMART
RRM_dom (IPR000504) - T[104-176] 7.8E-20
Pfam
RRM_dom (IPR000504) - T[105-174] 1.0E-16

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
PABP2_HUMAN 71.839 % 223 8.36E-73
EPAB2_HUMAN 52.66 % 165 2.47E-50