- Transcript 'KH2012:KH.S811.3.v1....' >
- Transcript 'Harore.CG.MTP2014.S4...' >
- Transcript 'Harore.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S20.g07632.01.t
Possible name(s)
RPS27A; UBB; UBC
Gene model
Location
S20 [127,234 / 128,332]
Amino acid sequence
Length: 304
>Harore.CG.MTP2014.S20.g07632.01.p
MIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI
QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIF
AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKTK
IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTI
TLEVEASDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL
RGGY
Nucleotide sequence
Length: 915
>Harore.CG.MTP2014.S20.g07632.01.t
ATGATCTTCGTCAAAACCTTGACCGGTAAGACGATCACCCTTGAAGTTGAGGCTTCGGAC
ACCATTGAGAATGTCAAGGCAAAAATCCAAGACAAAGAAGGGATTCCTCCAGATCAACAA
CGTCTCATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTTAGCGACTACAACATC
CAGAAGGAATCCACACTCCATCTTGTACTCCGTCTCAGAGGAGGAATGCAGATCTTCGTC
AAAACCTTGACCGGTAAGACGATCACCCTCGAAGTTGAGGCTTCGGACACCATTGAGAAT
GTCAAGGCAAAAATCCAAGACAAAGAAGGGATTCCTCCAGATCAACAACGTCTCATCTTT
GCTGGCAAGCAGCTTGAGGATGGCCGCACTCTTAGCGACTACAACATCCAGAAGGAATCC
ACACTCCATCTTGTACTCCGTCTCAGAGGAGGAATGCAGATCTTCGTCAAAACCTTGACC
GGTAAGACGATCACCCTTGAAGTTGAGGCTTCGGACACCATTGAGAATGTCAAGACAAAA
ATCCAGGATAAAGAAGGAATTCCTCCAGATCAACAACGTCTCATCTTTGCTGGCAAGCAG
CTTGAGGATGGCCGCACTCTTAGCGACTACAACATCCAGAAGGAATCCACACTCCATCTT
GTACTCCGTCTCAGAGGAGGAATGCAGATCTTCGTCAAAACCTTGACCGGTAAGACGATC
ACCCTTGAAGTTGAGGCTTCGGACACCATTGAGAATGTCAAGACAAAAATCCAGGATAAA
GAAGGAATTCCTCCAGATCAACAACGTCTCATCTTTGCTGGCAAGCAGCTTGAGGATGGC
CGCACTCTGAGTGACTACAACATCCAGAAGGAATCAACACTCCATCTGGTTTTGCGTCTC
CGTGGCGGTTACTAG
| ProSiteProfiles |
Ubiquitin_dom (IPR000626) - T[1-75] 29.777 - T[76-151] 30.735 - T[152-227] 30.648 - T[228-303] 30.648 |
| SMART |
Ubiquitin_dom (IPR000626) - T[1-71] 1.4E-32 - T[76-147] 1.4E-35 - T[152-223] 4.1E-35 - T[228-299] 4.1E-35 |
| Pfam |
Ubiquitin_dom (IPR000626) - T[2-73] 2.1E-33 - T[78-149] 2.1E-33 - T[154-225] 6.0E-33 - T[230-301] 6.0E-33 |
| SUPERFAMILY |
Ubiquitin-like_domsf (IPR029071) - T[2-75] 1.3E-32 - T[75-151] 3.46E-34 - T[151-227] 5.18E-34 - T[226-303] 2.69E-34 |
| PRINTS |
Ubiquitin (IPR019956) - T[10-30] 4.9E-38 - T[31-51] 4.9E-38 - T[52-73] 4.9E-38 |
| ProSitePatterns |
Ubiquitin_CS (IPR019954) - T[26-51] . - T[102-127] . - T[178-203] . - T[254-279] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RL40_HUMAN | 97.403 % | 154 | 2.8E-47 |
| UBB_HUMAN | 97.807 % | 441 | 7.77E-159 |
| UBC_HUMAN | 98.013 % | 584 | 0 |