- Transcript 'KH2012:KH.C8.109.v2....' >
- Transcript 'Harore.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S205.g08933.01.t
Possible name(s)
POC1A; POC1B; RACK1
Gene model
Location
S205 [154,899 / 158,040]
Amino acid sequence
Length: 345
>Harore.CG.MTP2014.S205.g08933.01.p
MIIKYFRPQWVACEILICLLLHLKGKMSEQMTLRGTLQGHNGWVTQIATTPAYPDMVLSS
SRDKSIILWKLTRGEGTYGIPQRRMTAHSHFVSDIVISSDGQFALSGSWDGELRLWDLTL
GCSTRRFKGHTKDVISVAFSTDNRQIVSASRDRTIKLWNTLGVCKYTIMDEGHSDWVSCV
RFSPNAGNPVIVSCGWDKTVKVWNLTNCKLKTNHFGHTAYCNAVTVSPDGSLCASGGKDG
QAMLWDLNEGKHLYTLNGEAEIHAMAFSPNRYWLAAACGPCVKIWDLEGKVVVDELKPEL
INIANSKADPPECLSLAWSADGQTLFAGYADNLIRVWQVSVPAHI
Nucleotide sequence
Length: 1,603
>Harore.CG.MTP2014.S205.g08933.01.t
ATGATCATTAAATATTTCCGACCCCAGTGGGTAGCCTGTGAAATTTTGATCTGTTTGTTA
CTGCATTTAAAAGGAAAAATGTCAGAACAGATGACACTGCGTGGAACCCTCCAGGGTCAT
AATGGTTGGGTGACTCAAATTGCAACTACTCCAGCGTATCCAGACATGGTTCTATCTTCT
TCTCGAGATAAAAGTATTATCCTGTGGAAACTTACCCGGGGAGAGGGGACGTATGGTATT
CCGCAACGCAGAATGACTGCGCATTCTCACTTTGTCTCAGATATTGTCATATCATCAGAT
GGCCAATTTGCTTTGTCAGGTTCCTGGGATGGTGAATTGAGACTATGGGATCTTACACTA
GGCTGTAGTACACGACGTTTCAAAGGCCACACAAAAGATGTTATTTCTGTTGCATTCTCA
ACTGACAATCGACAGATTGTGTCAGCATCCAGGGATAGAACCATTAAACTCTGGAACACT
TTGGGAGTATGTAAATATACAATAATGGATGAAGGACATTCTGACTGGGTCTCTTGTGTT
CGCTTCTCACCAAATGCTGGAAATCCGGTTATCGTGTCATGTGGATGGGATAAAACTGTC
AAGGTTTGGAATCTAACCAACTGCAAGCTAAAAACTAATCATTTTGGACATACTGCATAT
TGCAATGCTGTTACTGTTTCTCCTGATGGATCACTTTGTGCTTCTGGAGGGAAAGACGGG
CAAGCAATGCTTTGGGATCTTAATGAAGGGAAACATCTGTATACATTGAATGGTGAGGCT
GAAATTCATGCAATGGCATTCTCTCCTAATCGCTATTGGCTTGCTGCAGCATGTGGTCCA
TGTGTTAAAATCTGGGATTTGGAAGGAAAAGTTGTGGTTGATGAATTGAAACCGGAATTG
ATTAACATCGCAAATAGCAAAGCTGACCCACCAGAATGTCTGTCTCTTGCATGGTCTGCA
GATGGACAGACCTTGTTCGCGGGATATGCTGATAACTTGATCCGAGTATGGCAAGTTTCA
GTACCAGCGCATATCTAAGAAGAGAAAGCTTTTGATGACAACCTTGAGAGTAATTTTGCG
TGTAGAATATCCTGATGTTCCTTTTATGGAAATTTATTTGTGAAGTACTTATGTGACGCA
ACTTACTGCTAAAAATACAAGGATGTGTTACAAAAGCTAACGGCTGTGTATTTCATTGTG
AAGTTCATTCAATCATTCTGACACTGTACCAAATATACCTAGAGCAGGCCGGCACAATAT
ACAAGCAGCTGCATCTTTTGACGTCAAACTTTTGAGAACATATTTTTCAGAAAATGCTCG
CAACAAAAATATATTTTTGTTTGTCTAGAACAAAATAATCTCATATAATACACATAGTTT
TCAAGGTTAAAAATTCTGTAATGTAGTTTGAACATTACTCTTGTAATCAGCAGCTAGTTT
TCAATGATCGGTGTGGAAAGTTTAGCAGGCCCGAGTGCTCAGTGCTGCTACTGCAATCGC
CCTTGGTTAACAATAATTTCCCCGATACAATGTTTTTCCCTATGGCGGCAAAGATATGCT
TGAGGTTCGCGTCTGGGTTGCTGTCAAGTAGCTTTTTCGAGAT
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[30-338] 1.91E-73 |
| SMART |
WD40_repeat (IPR001680) - T[30-70] 6.6E-6 - T[78-117] 1.3E-5 - T[120-159] 1.4E-9 - T[161-204] 3.4E-9 - T[206-246] 1.7E-7 - T[249-286] 0.025 - T[297-338] 0.11 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[34-343] 4.8E-132 |
| Pfam |
WD40_repeat (IPR001680) - T[35-70] 0.0028 - T[81-117] 1.9E-6 - T[124-159] 8.8E-8 - T[171-204] 2.1E-6 - T[214-246] 9.1E-5 - T[250-286] 3.1E-4 - T[315-337] 0.01 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[37-345] 50.489 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[37-79] 11.377 - T[85-118] 13.382 - T[127-159] 15.621 - T[170-213] 12.647 - T[214-255] 13.449 - T[315-345] 9.773 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[104-118] 6.4E-8 - T[146-160] 6.4E-8 - T[233-247] 6.4E-8 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[104-118] . - T[146-160] . - T[191-205] . - T[233-247] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| POC1A_HUMAN | 27.937 % | 115 | 4.35E-29 |
| POC1B_HUMAN | 27.848 % | 122 | 4.27E-31 |
| RACK1_HUMAN | 79.683 % | 539 | 0 |