Aniseed - Transcript Card

Transcript 'Harore.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S203.g07741.01.t

Possible name(s)

SAMD8; SGMS1; SGMS2

Gene model

Harore.CG.MTP2014.S203.g07741

Location

S203 [3,230 / 12,525]

Sequences

Amino acid sequence

Length: 455

>Harore.CG.MTP2014.S203.g07741.01.p
MTTMANDDKENVFRWTTTDVENWLKKCGFDRFVRLFCEDHEINGEVLLMLTEKDLQNPPL
QLTKLGDIKRLSSCLKQLQHKQRKIFNDGSYNAKEFNHHIHAPMPSSVTSESLDNSFKLT
IGSDHTTLFLTPSDKEVAYTNEGENIFYGRSVEENRKRRVVFRPEYKKTILSLIYGTVLM
FMNTFVVVVVHDRVPDKTKHPPLPDIFLDNIPLIPQAFVLAEVCGAILMAIWACIVIFHK
HRSILIRRMYCIISLVYFLRCITMFVTSLSVPSAHLQCSAGQYSTLDARIKRAYVLLTGF
GMSLNGLNSCGDYIFSGHAIILTMLNFLITKYTPVRLYVLHISSWVICLFGLFFILAGHE
HYTIDVIIAFYVTSRLFQYYHILANMRSSQHGKNIMILFPFFSYFECNVPSTVPNEFEWP
FPMLTEIKHVCKDIMNSVKLRIFKFCSVLKQTKNM

Nucleotide sequence

Length: 1,415

>Harore.CG.MTP2014.S203.g07741.01.t
GTGTTCGATGCTGATGAAATCTGTCAAGATTTAATTTGGGTAAAATTATGACCACCATGG
CCAATGATGATAAGGAAAACGTCTTTCGATGGACGACAACAGATGTCGAAAACTGGCTGA
AAAAATGTGGGTTCGATAGATTTGTCAGATTGTTTTGTGAAGATCATGAAATAAATGGTG
AAGTGTTGCTCATGCTGACAGAAAAAGATCTGCAAAATCCGCCGCTGCAGCTGACAAAAC
TGGGAGATATCAAGAGACTTTCCTCATGTTTAAAACAATTACAACACAAGCAGAGGAAAA
TATTTAATGATGGTAGCTACAATGCGAAAGAATTCAATCACCATATCCACGCTCCCATGC
CATCTTCAGTCACTAGTGAGAGCCTTGATAACAGTTTCAAGCTGACAATCGGGAGTGATC
ACACGACTCTTTTTTTAACCCCGTCTGACAAAGAGGTCGCATATACGAACGAAGGAGAGA
ACATATTTTATGGCCGTTCCGTCGAAGAAAATAGAAAGAGGAGAGTTGTGTTCAGGCCTG
AATATAAGAAAACAATTCTGAGCTTGATCTACGGTACAGTGCTCATGTTCATGAATACAT
TTGTGGTGGTTGTTGTTCATGACCGGGTACCAGACAAAACAAAGCACCCTCCCCTTCCTG
ATATATTTCTGGACAACATACCATTGATACCGCAGGCGTTTGTTCTCGCTGAAGTGTGTG
GAGCAATATTAATGGCAATATGGGCATGCATTGTAATATTTCATAAGCACAGGAGTATCC
TTATTCGTCGCATGTACTGCATCATTTCATTAGTATACTTCCTACGTTGCATTACAATGT
TTGTAACATCATTATCAGTTCCCAGTGCACACTTGCAATGCAGTGCAGGTCAATATTCAA
CACTGGACGCACGTATCAAGCGGGCGTATGTGTTATTAACTGGATTTGGAATGTCTTTGA
ATGGTTTAAACAGTTGTGGAGATTATATTTTCAGTGGCCATGCAATCATTCTTACGATGC
TCAATTTTCTTATTACCAAATATACGCCGGTTCGTTTATATGTGCTCCACATTTCTTCGT
GGGTTATTTGTTTGTTTGGATTATTCTTCATCCTAGCAGGACATGAGCATTATACAATAG
ACGTAATCATTGCATTTTATGTTACCTCGAGACTATTTCAATATTATCACATTTTGGCAA
ATATGAGGAGTAGTCAACATGGCAAAAATATTATGATCTTGTTTCCGTTCTTCTCCTATT
TCGAATGCAATGTACCTAGCACGGTGCCGAACGAGTTTGAATGGCCGTTCCCAATGCTCA
CCGAAATAAAGCATGTTTGCAAAGATATCATGAATTCAGTGAAGTTAAGGATCTTCAAAT
TCTGCTCTGTCTTGAAACAAACAAAAAATATGTGA

InterProScan

SUPERFAMILY	SAM/pointed_sf (IPR013761) - T[10-81] 7.71E-16
SMART	SAM (IPR001660) - T[12-81] 2.3E-5
Pfam	SAM (IPR001660) - T[15-78] 1.4E-11
ProSiteProfiles	SAM (IPR001660) - T[15-81] 14.178
Pfam	Sphingomyelin_synth-like_dom (IPR025749) - T[309-382] 2.5E-22

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
SMS1_HUMAN	32.779 %	246	3.55E-77
SMS2_HUMAN	39.63 %	213	6.69E-65
SAMD8_HUMAN	47.129 %	389	9.89E-133