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TRANSCRIPT CARD

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  1. Transcript 'Cisavi.CG.ENS81.R16....' > 
  2. Transcript 'Cisavi.CG.ENS81.R16....' > 
  3. Transcript 'Cisavi.CG.ENS81.R19....' > 
  4. Transcript 'KH2012:KH.L65.6.v1.A...' > 
  5. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chrUn.g49627.01.t

Possible name(s)

SOX14; SOX2; SOX21

Gene model

Boschl.CG.Botznik2013.chrUn.g49627

Location

chrUn [306,981,680 / 306,983,069]

Sequences

Amino acid sequence

Length: 153

>Boschl.CG.Botznik2013.chrUn.g49627.01.p
MAQENPKMHNSEISKRLGAAWKLLTESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKPKA
LIKTKDRFSFPLFPTSMASQSADPSAAIAMAAQQAAVVAQMAMDPIAAEKARAAASAFFP
PTTSSYLSALEMTSNSSSLARLAAAVRDSPLYS

Nucleotide sequence

Length: 461

>Boschl.CG.Botznik2013.chrUn.g49627.01.t
GATGGCACAGGAAAACCCCAAGATGCACAATTCAGAGATTTCAAAGCGATTGGGCGCGGC
GTGGAAGCTCCTCACAGAGTCCGAGAAGCGTCCCTTCATCGACGAAGCCAAAAGACTGCG
AGCTCTTCACATGAAGGAACATCCAGATTACAAGTACAGACCGCGCCGAAAACCCAAGGC
TCTCATCAAGACCAAAGACCGATTCTCCTTTCCGCTCTTTCCTACCTCAATGGCGTCACA
AAGCGCAGATCCGAGCGCAGCGATCGCGATGGCCGCACAACAAGCAGCAGTAGTTGCCCA
GATGGCGATGGACCCGATCGCAGCGGAGAAAGCGCGCGCCGCGGCATCTGCTTTCTTCCC
GCCCACAACATCCTCGTACCTGAGCGCGCTTGAGATGACATCAAACTCGTCGTCGCTGGC
CAGATTGGCGGCCGCAGTCCGGGATTCGCCGCTTTACAGCG

InterProScan

ProSiteProfiles
HMG_box_dom (IPR009071) - T[1-51] 16.618
Pfam
HMG_box_dom (IPR009071) - T[1-51] 1.8E-17
SMART
HMG_box_dom (IPR009071) - T[1-52] 3.2E-9
Gene3D
HMG_box_dom_sf (IPR036910) - T[1-58] 2.2E-21
SUPERFAMILY
HMG_box_dom_sf (IPR036910) - T[2-61] 1.7E-19

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SOX2_HUMAN 84.507 % 133 7.84E-39
SOX21_HUMAN 88.889 % 139 1.59E-41
SOX14_HUMAN 58.73 % 137 3.94E-41