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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C5.25.v1.A...'
  2. Transcript 'KH2012:KH.C8.163.v3....'
  3. Transcript 'KH2012:KH.C4.401.v3....'
  4. Transcript 'Moocci.CG.ELv1_2.S14...'
  5. Transcript 'Harore.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S201.g00031.03.t

Possible name(s)

CHRNA1; CHRNA3; CHRNA6

Location

S201 [151,681 / 156,679]

Sequences

Amino acid sequence

Length: 517

>Harore.CG.MTP2014.S201.g00031.03.p
MLRIASIDPLKAKLVHRKLLQAINHEQRLLPFRLLNKNQCILALVFLICASLSYIHGGSR
NSITEKLMGKYDKKVRPAAGFNESVRVAFKLYLNQLLDVNEVSQKIDTKLWFHYRWTDRR
LRWKPSEYEGLEYIHLSTDTLWLPDFLLYNNADGDFAVKDFTKAKIYSNGTIQWIPPAIF
SSFCEIQVANFPFDTQNCTMKIGPWTSGMDLLDMVNSDDQVVDPKCESPDLSDFEENGEW
KVLAVGCYKHYIRYKCCVGPYVDMTYHFVIQRRPLYLMMNILFPTMLFSFLTCTVFYLPS
DAGEKMTLSVSLLLSLVVFLLVIVEAIPSTAKGVPLLGQYILFTMILVTLSIIITVFVLN
IHYRTPSTHTMPDWVKKVFIVWLPRIMFSSTIKRMDPFAEKEIADSKKNFYNDISEISGK
THTREQPFLLNPDAKLAIDGVQLMAEHFKDEEESFKVWYGIVYNNTLFRVFSHGYSSQDL
SPFKFECQVKPFYFTDSSQFRHLSHFGKSRVTHYCPG

Nucleotide sequence

Length: 1,554

>Harore.CG.MTP2014.S201.g00031.03.t
ATGCTTAGGATTGCTTCGATTGATCCGTTGAAAGCTAAGTTAGTTCATCGAAAACTACTT
CAAGCCATCAATCATGAACAAAGGTTGCTTCCTTTCAGGCTTCTCAATAAGAATCAATGC
ATCTTGGCACTGGTTTTTCTGATATGTGCATCGTTGTCATATATACACGGAGGGTCGCGC
AACAGCATCACTGAAAAACTCATGGGAAAATATGACAAAAAAGTACGTCCAGCTGCCGGT
TTCAACGAGAGTGTACGGGTTGCATTCAAACTCTATTTGAATCAACTTCTGGACGTCAAC
GAAGTGTCTCAAAAAATTGACACAAAACTTTGGTTTCATTATCGTTGGACGGACCGTCGA
CTGCGGTGGAAACCTTCTGAGTACGAAGGCCTCGAATATATTCATTTGTCCACTGACACA
CTCTGGTTACCAGATTTTCTTCTTTATAACAACGCTGACGGAGATTTTGCGGTGAAGGAC
TTTACCAAAGCCAAGATTTACAGCAACGGAACGATCCAATGGATACCTCCAGCAATTTTC
AGCAGCTTTTGTGAAATACAGGTTGCGAATTTTCCCTTCGATACACAAAACTGCACAATG
AAAATTGGTCCATGGACTTCAGGCATGGACTTACTTGACATGGTTAATTCCGATGACCAA
GTGGTTGATCCAAAATGCGAATCACCAGACCTGAGTGACTTTGAAGAGAATGGAGAATGG
AAAGTGTTAGCTGTTGGCTGTTACAAGCATTACATAAGATACAAATGTTGCGTGGGGCCA
TACGTCGATATGACTTATCACTTCGTTATTCAACGGCGCCCTCTATATCTGATGATGAAC
ATTTTATTTCCTACTATGCTATTCTCTTTCTTGACTTGCACGGTATTTTATTTGCCTTCT
GACGCTGGTGAGAAGATGACGCTCAGTGTATCTTTACTGCTTTCTCTGGTTGTGTTTCTC
CTAGTTATCGTTGAAGCAATCCCATCAACCGCTAAGGGTGTACCTTTACTTGGCCAGTAT
ATCCTGTTCACTATGATTTTAGTCACATTATCGATCATCATAACAGTCTTTGTACTGAAC
ATTCATTATCGGACACCATCGACTCACACCATGCCAGACTGGGTGAAAAAGGTCTTTATT
GTCTGGCTTCCTCGTATCATGTTCAGTTCCACCATAAAGAGAATGGATCCGTTTGCGGAA
AAGGAAATAGCCGACTCTAAAAAGAATTTTTATAACGATATTTCAGAAATCTCTGGAAAA
ACGCATACGAGAGAGCAGCCTTTTCTACTAAATCCTGATGCGAAATTGGCTATCGACGGA
GTGCAGTTGATGGCGGAACATTTTAAAGACGAAGAAGAAAGTTTCAAGGTATGGTATGGT
ATAGTATACAATAATACTTTATTTCGAGTATTTTCTCACGGATATTCCTCCCAAGATTTA
AGTCCTTTCAAGTTCGAGTGTCAAGTCAAACCATTTTATTTCACTGATTCAAGTCAATTC
AGGCATTTAAGTCATTTCGGCAAGAGTCGAGTAACGCATTACTGCCCTGGATAA

InterProScan

PANTHER
Neur_channel (IPR006201) - T[45-425] 3.2E-120
Gene3D
Neur_chan_lig-bd_sf (IPR036734) - T[58-274] 1.7E-73
SUPERFAMILY
Neur_chan_lig-bd_sf (IPR036734) - T[60-274] 2.88E-63
Pfam
Neur_chan_lig-bd (IPR006202) - T[62-274] 8.1E-65
PRINTS
Nicotinic_acetylcholine_rcpt (IPR002394) - T[94-110] 1.3E-15 - T[128-142] 1.3E-15 - T[146-158] 1.3E-15 - T[164-182] 1.3E-15
PRINTS
Neur_channel (IPR006201) - T[107-123] 1.0E-12 - T[140-151] 1.0E-12 - T[184-198] 1.0E-12 - T[268-280] 1.0E-12
ProSitePatterns
Neurotransmitter_ion_chnl_CS (IPR018000) - T[184-198] .
SUPERFAMILY
Neuro-gated_channel_TM_sf (IPR036719) - T[274-460] 2.62E-49
Pfam
Neurotrans-gated_channel_TM (IPR006029) - T[282-393] 1.5E-43

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
ACHA3_HUMAN 42.263 % 347 2.04E-114
ACHA6_HUMAN 40.605 % 343 7.26E-113
ACHA_HUMAN 44.325 % 365 1.62E-121