- Transcript 'Harore.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S201.g00031.03.t
Possible name(s)
CHRNA1; CHRNA3; CHRNA6
Gene model
Location
S201 [151,681 / 156,679]
Amino acid sequence
Length: 517
>Harore.CG.MTP2014.S201.g00031.03.p
MLRIASIDPLKAKLVHRKLLQAINHEQRLLPFRLLNKNQCILALVFLICASLSYIHGGSR
NSITEKLMGKYDKKVRPAAGFNESVRVAFKLYLNQLLDVNEVSQKIDTKLWFHYRWTDRR
LRWKPSEYEGLEYIHLSTDTLWLPDFLLYNNADGDFAVKDFTKAKIYSNGTIQWIPPAIF
SSFCEIQVANFPFDTQNCTMKIGPWTSGMDLLDMVNSDDQVVDPKCESPDLSDFEENGEW
KVLAVGCYKHYIRYKCCVGPYVDMTYHFVIQRRPLYLMMNILFPTMLFSFLTCTVFYLPS
DAGEKMTLSVSLLLSLVVFLLVIVEAIPSTAKGVPLLGQYILFTMILVTLSIIITVFVLN
IHYRTPSTHTMPDWVKKVFIVWLPRIMFSSTIKRMDPFAEKEIADSKKNFYNDISEISGK
THTREQPFLLNPDAKLAIDGVQLMAEHFKDEEESFKVWYGIVYNNTLFRVFSHGYSSQDL
SPFKFECQVKPFYFTDSSQFRHLSHFGKSRVTHYCPG
Nucleotide sequence
Length: 1,554
>Harore.CG.MTP2014.S201.g00031.03.t
ATGCTTAGGATTGCTTCGATTGATCCGTTGAAAGCTAAGTTAGTTCATCGAAAACTACTT
CAAGCCATCAATCATGAACAAAGGTTGCTTCCTTTCAGGCTTCTCAATAAGAATCAATGC
ATCTTGGCACTGGTTTTTCTGATATGTGCATCGTTGTCATATATACACGGAGGGTCGCGC
AACAGCATCACTGAAAAACTCATGGGAAAATATGACAAAAAAGTACGTCCAGCTGCCGGT
TTCAACGAGAGTGTACGGGTTGCATTCAAACTCTATTTGAATCAACTTCTGGACGTCAAC
GAAGTGTCTCAAAAAATTGACACAAAACTTTGGTTTCATTATCGTTGGACGGACCGTCGA
CTGCGGTGGAAACCTTCTGAGTACGAAGGCCTCGAATATATTCATTTGTCCACTGACACA
CTCTGGTTACCAGATTTTCTTCTTTATAACAACGCTGACGGAGATTTTGCGGTGAAGGAC
TTTACCAAAGCCAAGATTTACAGCAACGGAACGATCCAATGGATACCTCCAGCAATTTTC
AGCAGCTTTTGTGAAATACAGGTTGCGAATTTTCCCTTCGATACACAAAACTGCACAATG
AAAATTGGTCCATGGACTTCAGGCATGGACTTACTTGACATGGTTAATTCCGATGACCAA
GTGGTTGATCCAAAATGCGAATCACCAGACCTGAGTGACTTTGAAGAGAATGGAGAATGG
AAAGTGTTAGCTGTTGGCTGTTACAAGCATTACATAAGATACAAATGTTGCGTGGGGCCA
TACGTCGATATGACTTATCACTTCGTTATTCAACGGCGCCCTCTATATCTGATGATGAAC
ATTTTATTTCCTACTATGCTATTCTCTTTCTTGACTTGCACGGTATTTTATTTGCCTTCT
GACGCTGGTGAGAAGATGACGCTCAGTGTATCTTTACTGCTTTCTCTGGTTGTGTTTCTC
CTAGTTATCGTTGAAGCAATCCCATCAACCGCTAAGGGTGTACCTTTACTTGGCCAGTAT
ATCCTGTTCACTATGATTTTAGTCACATTATCGATCATCATAACAGTCTTTGTACTGAAC
ATTCATTATCGGACACCATCGACTCACACCATGCCAGACTGGGTGAAAAAGGTCTTTATT
GTCTGGCTTCCTCGTATCATGTTCAGTTCCACCATAAAGAGAATGGATCCGTTTGCGGAA
AAGGAAATAGCCGACTCTAAAAAGAATTTTTATAACGATATTTCAGAAATCTCTGGAAAA
ACGCATACGAGAGAGCAGCCTTTTCTACTAAATCCTGATGCGAAATTGGCTATCGACGGA
GTGCAGTTGATGGCGGAACATTTTAAAGACGAAGAAGAAAGTTTCAAGGTATGGTATGGT
ATAGTATACAATAATACTTTATTTCGAGTATTTTCTCACGGATATTCCTCCCAAGATTTA
AGTCCTTTCAAGTTCGAGTGTCAAGTCAAACCATTTTATTTCACTGATTCAAGTCAATTC
AGGCATTTAAGTCATTTCGGCAAGAGTCGAGTAACGCATTACTGCCCTGGATAA
| PANTHER |
Neur_channel (IPR006201) - T[45-425] 3.2E-120 |
| Gene3D |
Neur_chan_lig-bd_sf (IPR036734) - T[58-274] 1.7E-73 |
| SUPERFAMILY |
Neur_chan_lig-bd_sf (IPR036734) - T[60-274] 2.88E-63 |
| Pfam |
Neur_chan_lig-bd (IPR006202) - T[62-274] 8.1E-65 |
| PRINTS |
Nicotinic_acetylcholine_rcpt (IPR002394) - T[94-110] 1.3E-15 - T[128-142] 1.3E-15 - T[146-158] 1.3E-15 - T[164-182] 1.3E-15 |
| PRINTS |
Neur_channel (IPR006201) - T[107-123] 1.0E-12 - T[140-151] 1.0E-12 - T[184-198] 1.0E-12 - T[268-280] 1.0E-12 |
| ProSitePatterns |
Neurotransmitter_ion_chnl_CS (IPR018000) - T[184-198] . |
| SUPERFAMILY |
Neuro-gated_channel_TM_sf (IPR036719) - T[274-460] 2.62E-49 |
| Pfam |
Neurotrans-gated_channel_TM (IPR006029) - T[282-393] 1.5E-43 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ACHA3_HUMAN | 42.263 % | 347 | 2.04E-114 |
| ACHA6_HUMAN | 40.605 % | 343 | 7.26E-113 |
| ACHA_HUMAN | 44.325 % | 365 | 1.62E-121 |