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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.L149.21.v2...' > 
  2. Transcript 'Boleac.CG.SB_v3.S152...' > 
  3. Transcript 'KH2012:KH.C1.777.v2....' > 
  4. Transcript 'Harore.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S201.g00031.02.t

Possible name(s)

CHRNA1; CHRNA3; CHRNA6

Gene model

Harore.CG.MTP2014.S201.g00031

Location

S201 [151,681 / 153,455]

Sequences

Amino acid sequence

Length: 226

>Harore.CG.MTP2014.S201.g00031.02.p
MDQNIFFCSSSCPEIVLRTFEAIPSTAKGVPLLGQYILFTMILVTLSIIITVFVLNIHYR
TPSTHTMPDWVKKVFIVWLPRIMFSSTIKRMDPFAEKEIADSKKNFYNDISAENYIDLFY
FTFKEISGKTHTREQPFLLNPDAKLAIDGVQLMAEHFKDEEESFKVWYGIVYNNTLFRVF
SHGYSSQDLSPFKFECQVKPFYFTDSSQFRHLSHFGKSRVTHYCPG

Nucleotide sequence

Length: 681

>Harore.CG.MTP2014.S201.g00031.02.t
ATGGATCAAAATATATTTTTTTGTAGTAGCAGTTGTCCTGAGATAGTACTACGAACGTTT
GAAGCAATCCCATCAACCGCTAAGGGTGTACCTTTACTTGGCCAGTATATCCTGTTCACT
ATGATTTTAGTCACATTATCGATCATCATAACAGTCTTTGTACTGAACATTCATTATCGG
ACACCATCGACTCACACCATGCCAGACTGGGTGAAAAAGGTCTTTATTGTCTGGCTTCCT
CGTATCATGTTCAGTTCCACCATAAAGAGAATGGATCCGTTTGCGGAAAAGGAAATAGCC
GACTCTAAAAAGAATTTTTATAACGATATTTCAGCGGAAAATTACATAGACCTTTTTTAC
TTTACTTTTAAAGAAATCTCTGGAAAAACGCATACGAGAGAGCAGCCTTTTCTACTAAAT
CCTGATGCGAAATTGGCTATCGACGGAGTGCAGTTGATGGCGGAACATTTTAAAGACGAA
GAAGAAAGTTTCAAGGTATGGTATGGTATAGTATACAATAATACTTTATTTCGAGTATTT
TCTCACGGATATTCCTCCCAAGATTTAAGTCCTTTCAAGTTCGAGTGTCAAGTCAAACCA
TTTTATTTCACTGATTCAAGTCAATTCAGGCATTTAAGTCATTTCGGCAAGAGTCGAGTA
ACGCATTACTGCCCTGGATAA

InterProScan

Pfam
Neurotrans-gated_channel_TM (IPR006029) - T[18-166] 1.2E-27
SUPERFAMILY
Neuro-gated_channel_TM_sf (IPR036719) - T[19-170] 2.35E-28
PANTHER
Neur_channel (IPR006201) - T[19-110] 5.5E-34

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
ACHA3_HUMAN 36.416 % 104 4.86E-26
ACHA6_HUMAN 68.75 % 96.7 3.66E-23
ACHA_HUMAN 41.954 % 101 7.91E-25