- Region 'REG00000366' >
- Molecular Tool 'Neurogenin-MO (Imai 2009)' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S1.g06477.01.t
Possible name(s)
ACTA1; ACTA2; ACTC1
Gene model
Location
S1 [953,851 / 955,350]
Amino acid sequence
Length: 389
>Harore.CG.MTP2014.S1.g06477.01.p
MSDGEEDQTAIVCDNGSGLVKSGFAGDDAPRAVFPSTVGRPRHQGVMVGMGQKDSYVGDE
AQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANRE
KMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHNVPIYEGYALPHAIAR
LDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFEQEMATAASSTSLE
KSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANN
VLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGDISLPPMYSGIACSE
AVLKRISSNLFAMVISVYNIVLFIFTWLL
Nucleotide sequence
Length: 1,170
>Harore.CG.MTP2014.S1.g06477.01.t
ATGTCGGACGGAGAAGAAGATCAAACCGCCATCGTCTGCGACAACGGATCAGGATTGGTC
AAATCAGGATTCGCCGGTGATGACGCTCCCAGAGCTGTATTTCCATCCACCGTCGGACGA
CCAAGACATCAAGGTGTCATGGTTGGTATGGGACAGAAGGACAGTTATGTCGGTGATGAA
GCCCAAAGTAAAAGAGGAATTCTCACTCTCAAATATCCAATTGAACATGGAATCATTACA
AACTGGGACGATATGGAAAAGATTTGGCATCATACTTTCTACAATGAACTTCGTGTTGCT
CCTGAAGAACATCCCACTCTTCTTACGGAAGCTCCACTCAATCCTAAAGCCAACAGAGAG
AAGATGACTCAGATTATGTTTGAAACTTTCAACGTTCCGGCAATGTACGTCGCTATTCAA
GCTGTTCTTTCGCTTTATGCATCAGGAAGAACTACAGGAATCGTTTTGGATTCTGGAGAC
GGTGTTTCACATAACGTGCCAATTTATGAAGGATACGCTCTTCCACATGCAATTGCAAGA
CTCGATCTTGCCGGACGTGATCTCACTGATTATCTTATGAAGATTCTCACAGAGAGAGGA
TATTCATTCGTTACAACTGCTGAACGAGAAATTGTCCGAGATATCAAAGAAAAGCTCTGT
TATGTTGCTCTGGACTTTGAACAAGAAATGGCGACTGCCGCCTCGTCTACTTCTCTTGAA
AAAAGTTATGAATTACCAGATGGTCAAGTGATAACAATTGGTAATGAAAGATTCCGATGC
CCTGAAACTCTTTTCCAGCCGTCCTTCATTGGAATGGAATCTGCTGGCATCCATGAAACA
ACATACAATTCAATTATGAAATGTGACATCGATATTCGCAAAGATCTTTACGCCAACAAC
GTTTTATCAGGAGGAACAACTATGTATCCTGGTATTGCTGATCGTATGCAGAAGGAAATC
ACAGCCCTTGCTCCCAGCACAATGAAGATTAAAATCATTGCTCCCCCAGAACGAAAGTAC
TCGGTCTGGATCGGAGACATTTCCCTACCACCAATGTACTCTGGTATCGCTTGTTCAGAA
GCTGTGTTGAAGAGGATTAGTAGTAATCTATTTGCAATGGTAATTTCTGTTTATAATATC
GTATTATTCATTTTCACCTGGTTGCTATAA
| PANTHER |
Actin (IPR004000) - T[5-347] 3.0E-242 |
| Pfam |
Actin (IPR004000) - T[7-345] 4.7E-126 |
| SMART |
Actin (IPR004000) - T[8-367] 4.7E-198 |
| PRINTS |
Actin (IPR004000) - T[29-38] 5.3E-57 - T[52-63] 5.3E-57 - T[64-86] 5.3E-57 - T[118-131] 5.3E-57 - T[143-162] 5.3E-57 - T[239-255] 5.3E-57 |
| ProSitePatterns |
Actin_CS (IPR004001) - T[56-66] . |
| ProSitePatterns |
Actin/actin-like_CS (IPR020902) - T[107-119] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ACTA_HUMAN | 97.067 % | 697 | 0 |
| ACTS_HUMAN | 96.774 % | 695 | 0 |
| ACTC_HUMAN | 97.067 % | 696 | 0 |