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TRANSCRIPT CARD

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  1. Transcript 'Moocci.CG.ELv1_2.S27...' > 
  2. Clone 'ma206g01' > 
  3. Transcript 'Moocul.CG.ELv1_2.S83...' > 
  4. Clone 'ma338g15' > 
  5. Transcript 'Harore.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S196.g02375.02.t

Possible name(s)

ATAD5; CHTF18; RFC1

Gene model

Harore.CG.MTP2014.S196.g02375

Location

S196 [54,279 / 72,948]

Sequences

Amino acid sequence

Length: 958

>Harore.CG.MTP2014.S196.g02375.02.p
MDFDTYLGYNEEEAYEDQYAEEMKMLNDLEGLPKPNTDTSSSSQTHNHSSNESSKKKLFD
DAGPSHCSENHLLNNGFENDLIIDEELFETSPKRKRLKMDIGFEKKHNLPTTLDEDREAF
EMRQKQRNTSNMPDSPAMIERILRYRENKIKDIDNKEFLNKDIHNSTQTSRLQLTKVLVR
PPVYCDFISSTSSDGDRFYMRIHPEEELYKRENKILSESHRLTEQIRRQNVGIINEGDLS
NDVTNSSSARNDSMSQDAQRMTEAVMDTDEGEDENTRHALWLNKYAPTQYTHLLSDESVN
RALLKWLKMWDHVVFGRELPQKKVNKNPEEIKKQAYGFKKTFQHNNFEDKFDDYNRPHWK
IVLLYGPPGLGKTTLAHIIAKHAGYHVVEMNASDDRSAEAFRNKLEETTQMRSVLGYDQR
PNCLIIDEIDGAPVAAINVLLAAVNMVKKGKQAGTRKKRAQNNILLRPVICICNDLYAPA
LRQLRQHSLLLQFPPTQTARLASRLTQLCRLQQLQCDLTSLLTLCEKAENDIRSCINTLQ
FLKSCGTTKLDIHAIKNMNVGQKDQHKSIFNVWQEIFQLPKTKRKMEKNAEAVQLDSQLS
QQKLTVLATRFYTIYHVVLSNGEYDKTLQGVYENFLKMKFKDHDLACLNKAQEWLQFQDV
QSTFITRHQDWTVMKFSPFIFVLFHMLFACVSVPRITFPTQKFENTKRVQNCANLLESMY
SDMFPIARCFMHTRAAILDSIPYILEIMVPSIRPVNTQLFSPAEKKLVKDLVNTMLAYNL
TYRQERNEDGQYKYVLEPNVAEICFFSGTHEHRKLSYATMQMISKEVETERIRRSEHIME
VSVRHVEPKSMHEKPKPVDKPIEVSKPQPEKDSTPNHLQRLDKNISNASHSKEKPVFDFF
SKFKKVRKVVLIGENGDRNERKKQIVRDPGIGNSAIWFKFNEGISNAVRQTVKVKYFM

Nucleotide sequence

Length: 3,901

>Harore.CG.MTP2014.S196.g02375.02.t
AATACAGGTTGACCTTCTCTAATCTGGGATTCACCACTCGATGGTTTGAGGTGGGGATTC
AAATCTGGCATTTATTAGTTAATGTGTCTCATCTTATTCTTGTCTCACAGAACAGCAAAC
TTGCGCCAGAGGACTAGCACTTTGTAGTGAGGTCCTGCTCTAGGTTTATTCCTATGTGTA
TTACCCCAAACGGTAGATTTCTGCAGTTCAACCTGTACAGATTTTTCATTTTTATAATAA
TTCTATTCTTATAATTTCTTTTTTAAACTACGAGGTGTTTGGAAAGTCACTGTCACCTCA
TATATATGGTATTTATTCTATTGAAAAAGCGCACAGTGAATTATTGGATACCCTGTATTT
TGAAAGCTTTGACACAATTGGGGCTCCGGATTGTACTGGGATTGCAATAATTGTATTGTT
AGTATTTATATTATCACACACCTTCAAATTTTCTTAATATTAAACCCCCAAACGGTAGAT
TTCTGCAGTTCAACCTGTACAGATTTTTCATTTTTATAATAATTCTATTCTTATAATTTC
TTTTTTAAACTACGAGGTGTTTGGAAAGTCACTGTCACCTCATATATATGGTATTTATTC
TATTGAAAAAGCGCACAGTGAATTATTGGATACCCTGTATTTTGAAAGCTTTGACACAAT
TGGGGCTCCGGATTGTACTGGGATTGCAATAATTGTATTGTTAGTATTTATATTATCACA
CACCTTCAAATTTTCTTAATATTAAACTCTTCTTTTGTCTTGACTTGACTTTAGCATTAG
TACTGTTTCAAAAAAATCTCCATCGTCTCGCATTTAGCAGATTTAATTATTGTTTTCCAT
AACACTATCAATTTTCCAGTTCATTGCCTGAACGTTCTTGTGTTTTATTCAGATTTACAG
AATGGATTTTGATACATATTTAGGTTATAATGAGGAGGAAGCCTATGAAGATCAGTATGC
TGAAGAAATGAAGATGCTCAACGATCTGGAAGGATTGCCAAAGCCAAATACTGATACATC
TTCAAGTTCTCAAACACACAACCACAGTAGCAATGAATCGAGCAAAAAAAAACTGTTTGA
TGACGCTGGACCATCACATTGTTCAGAAAATCATCTGTTAAATAATGGATTTGAAAATGA
CTTGATTATTGATGAAGAGTTGTTTGAGACATCTCCAAAACGAAAAAGACTAAAAATGGA
TATAGGCTTTGAAAAGAAGCACAACCTGCCCACAACACTTGATGAAGATCGCGAAGCGTT
TGAAATGAGGCAAAAGCAAAGAAATACTAGCAACATGCCTGATTCTCCAGCAATGATAGA
AAGAATATTAAGATACAGGGAGAATAAAATCAAAGATATCGATAATAAAGAATTTTTGAA
CAAAGACATTCACAACTCAACACAGACAAGTAGGTTGCAGTTAACAAAGGTTTTGGTTAG
ACCTCCGGTATACTGCGACTTCATTTCTTCAACTTCCTCTGATGGGGATAGGTTTTACAT
GAGAATCCATCCAGAGGAGGAATTATATAAGCGGGAAAACAAAATTTTATCCGAATCTCA
TCGCTTAACTGAACAGATACGAAGACAAAATGTCGGTATCATCAATGAAGGTGACTTGTC
AAACGATGTCACAAATTCCAGCTCTGCTCGGAATGATAGCATGTCGCAAGATGCTCAAAG
GATGACTGAGGCTGTGATGGATACTGATGAAGGTGAAGATGAAAATACAAGACATGCCTT
ATGGTTGAACAAATATGCACCGACGCAATACACGCATTTATTGAGTGACGAGAGTGTAAA
CAGGGCACTTCTCAAATGGCTTAAAATGTGGGATCATGTGGTGTTTGGCCGTGAATTGCC
ACAGAAGAAGGTCAACAAAAATCCAGAGGAAATAAAAAAACAAGCCTACGGATTCAAAAA
GACTTTCCAACATAATAATTTCGAGGATAAATTCGATGACTACAATAGACCTCATTGGAA
GATTGTCCTATTATACGGACCTCCTGGATTGGGAAAGACAACTCTAGCTCATATTATTGC
AAAGCATGCTGGATATCATGTGGTGGAAATGAATGCTAGTGATGATCGCAGTGCCGAAGC
TTTCAGGAATAAATTAGAAGAAACAACACAAATGCGGTCAGTTCTTGGCTATGACCAGCG
TCCAAATTGTCTCATCATAGATGAAATTGATGGAGCTCCTGTGGCTGCCATTAACGTTTT
ACTCGCTGCAGTGAACATGGTTAAGAAAGGAAAACAAGCCGGGACAAGAAAAAAAAGAGC
CCAAAATAATATTCTGCTTCGTCCAGTTATCTGCATATGTAATGATTTGTATGCACCTGC
TCTCCGTCAACTCCGTCAGCATAGCTTGCTATTGCAGTTTCCACCAACACAGACCGCTCG
ACTTGCTAGCAGACTCACACAATTATGTCGTCTTCAACAATTGCAATGCGATCTGACATC
TTTATTAACTCTTTGTGAGAAGGCGGAAAACGATATTCGATCATGTATCAACACTCTGCA
GTTCTTGAAGTCTTGTGGAACCACTAAACTCGACATACATGCCATTAAGAACATGAACGT
TGGACAGAAGGATCAGCATAAAAGCATATTTAATGTATGGCAGGAAATATTCCAACTTCC
TAAAACGAAAAGGAAAATGGAGAAAAATGCAGAAGCGGTGCAGCTCGATTCCCAATTATC
ACAACAGAAACTGACAGTTCTAGCCACACGATTTTATACCATTTATCATGTTGTTTTGTC
AAACGGCGAGTATGATAAAACTTTACAGGGTGTGTATGAAAATTTCCTCAAAATGAAATT
CAAAGACCACGATTTGGCTTGCCTGAACAAAGCTCAAGAGTGGTTGCAATTTCAGGATGT
TCAATCTACCTTCATCACTCGTCATCAGGACTGGACAGTGATGAAATTCTCTCCTTTCAT
ATTTGTTCTGTTCCATATGTTATTTGCATGTGTGAGCGTACCCCGCATCACTTTCCCGAC
TCAGAAGTTTGAGAACACGAAGCGTGTACAGAATTGTGCCAATTTGTTAGAATCTATGTA
TAGCGATATGTTTCCAATCGCTAGATGCTTCATGCATACACGTGCCGCAATATTGGATTC
CATACCATACATTCTAGAGATCATGGTGCCATCGATACGACCGGTAAACACACAGTTGTT
CAGCCCTGCTGAAAAAAAACTCGTCAAAGACTTGGTCAATACCATGCTTGCCTACAATCT
GACATACAGACAAGAGAGAAATGAAGATGGACAGTATAAATATGTGCTTGAACCGAATGT
TGCAGAAATTTGCTTTTTCTCTGGAACTCATGAGCATCGTAAGCTCTCCTATGCCACCAT
GCAAATGATCTCGAAGGAGGTTGAAACAGAACGTATTCGAAGGAGTGAACACATCATGGA
GGTGTCTGTCAGGCATGTTGAACCAAAATCCATGCATGAAAAACCAAAACCGGTGGATAA
ACCGATAGAGGTATCAAAACCACAGCCGGAGAAAGATTCTACTCCGAATCATTTGCAGAG
ACTGGACAAGAACATATCTAACGCTTCACATTCTAAAGAGAAGCCTGTCTTCGATTTCTT
CAGCAAATTCAAAAAAGTGAGAAAAGTTGTTCTGATTGGAGAAAATGGAGATCGCAATGA
AAGAAAAAAACAGATTGTCCGCGATCCTGGAATCGGGAACAGTGCGATATGGTTCAAGTT
TAATGAAGGGATTTCGAACGCTGTAAGGCAAACTGTCAAAGTGAAATATTTTATGTAATT
TCTACAATGTTTGACTACGGCGTCGAGCTTCAATTCAGCTCCATATTAACTTTCTATGTT
ACAATCGGACATACTATTACATAGATGTGTCTTCTACTATATTAAAGTTCGCTGTAAGGT
G

InterProScan

SUPERFAMILY
P-loop_NTPase (IPR027417) - T[280-316] 3.76E-31 - T[347-549] 3.76E-31
SMART
AAA+_ATPase (IPR003593) - T[358-494] 8.2E-11
Pfam
ATPase_AAA_core (IPR003959) - T[362-461] 7.0E-14

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
CTF18_HUMAN 39.427 % 567 0
RFC1_HUMAN 25.298 % 105 5.28E-23