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TRANSCRIPT CARD

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  1. Transcript 'Harore.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S18.g00009.01.t

Possible name(s)

MCC; USHBP1

Location

S18 [258,192 / 261,271]

Sequences

Amino acid sequence

Length: 410

>Harore.CG.MTP2014.S18.g00009.01.p
MLTCIFKSLTIPNLLCKKEDELNKAKATLDGIREERDQLRRKVHNLLQEIDVLKSKQPLY
SSAQFLDQSQSKSCNILKLTKELSSAVVEQLVQTLQDSSSIQEILHSCQSPNNMINDKVL
RQEFQLQMEKANCRYEHLKSENNVLLLTLQESKSKTEQLQMLLYKYESNNTALEIAFFYS
ELILEAYDSLTSIMEETLTRKSLVEGLLRNCRQDCYKRMTKIIEYLDYLIESDFIVDQIP
RSAVKQTIMDLSSFSIELLHSPSSPKSPGINMQWDLENAVLLHELTSVKEELAELKWQQN
LRKSKIKDKLSEFDDEDVEDCAYAVSETENDKEDKSGRHPVIVSLADLRIGAMAESEIGA
ELSQALKREQKLKSEIERMSLTLQQVQINSEKRHNISKDVLSKLKTSYRY

Nucleotide sequence

Length: 1,233

>Harore.CG.MTP2014.S18.g00009.01.t
ATGTTGACTTGTATTTTCAAGAGTTTGACCATACCTAATCTTCTGTGCAAAAAAGAGGAT
GAACTTAACAAAGCCAAAGCCACGCTGGACGGAATTCGAGAAGAAAGAGATCAGTTGCGG
AGAAAAGTACATAACTTGTTGCAAGAGATTGATGTCCTCAAAAGCAAACAACCTTTATAT
AGCAGTGCTCAATTCCTTGATCAAAGTCAAAGTAAATCTTGCAATATTCTTAAGCTTACG
AAGGAGTTATCATCTGCTGTAGTAGAGCAGCTTGTTCAAACACTACAGGACAGTTCAAGC
ATTCAAGAAATATTGCATAGTTGTCAGTCGCCTAATAACATGATTAATGATAAAGTTCTC
AGACAAGAGTTTCAGCTGCAAATGGAAAAGGCAAATTGTCGCTATGAGCATCTGAAATCA
GAAAACAATGTCCTTCTTCTCACACTGCAAGAAAGCAAAAGCAAAACGGAACAGTTGCAA
ATGCTTCTCTACAAATATGAATCAAACAACACAGCGCTGGAGATAGCATTTTTTTACAGT
GAGCTGATTTTAGAAGCGTACGATTCATTGACATCTATAATGGAGGAAACTTTAACAAGG
AAATCTCTGGTTGAAGGTTTACTTCGTAACTGCAGACAGGACTGTTACAAAAGAATGACC
AAGATTATTGAATACCTCGACTACCTTATAGAGTCCGACTTCATTGTGGACCAAATCCCA
CGGAGCGCAGTCAAGCAAACCATCATGGACCTGAGTTCATTTTCGATAGAGCTTCTTCAC
TCTCCTTCTTCACCGAAATCTCCAGGAATCAATATGCAGTGGGACTTGGAAAATGCTGTG
CTACTTCATGAGCTAACGAGTGTCAAGGAAGAACTTGCAGAACTTAAATGGCAGCAAAAT
TTAAGAAAATCTAAGATAAAAGATAAGCTGTCTGAGTTTGATGATGAGGATGTGGAAGAT
TGTGCTTATGCGGTTAGCGAAACAGAGAATGATAAAGAAGATAAATCAGGCCGACATCCT
GTTATTGTGTCACTTGCTGACTTGAGAATCGGTGCTATGGCTGAAAGTGAGATTGGTGCT
GAGTTATCCCAAGCACTGAAACGCGAACAGAAACTCAAAAGTGAAATCGAAAGAATGTCG
TTAACTTTGCAGCAAGTCCAGATCAATAGTGAGAAGCGTCACAACATATCCAAAGACGTT
CTTTCAAAGTTGAAGACTTCATACAGGTATTAG

InterProScan

Pfam
USH1C-bd_PDZ_domain (IPR019536) - T[134-193] 3.3E-16

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
CRCM_HUMAN 35.983 % 99.4 2.55E-22