- Molecular Tool 'Etr>Onecut-WRPW (D'Aniello 2011)' >
- Transcript 'KH2012:KH.C12.566.v1...' >
- Transcript 'KH2012:KH.L116.85.v2...' >
- Transcript 'Phfumi.CG.MTP2014.S4...' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S186.g11015.01.t
Possible name(s)
HNRNPDL; RBM23; RBM39
Gene model
Location
S186 [9,268 / 10,431]
Amino acid sequence
Length: 387
>Harore.CG.MTP2014.S186.g11015.01.p
MADDLDVEAMLEAPFKKDQATENGESKSRSKNGRGKSSRDKKRSRSRKRSRSRKESKSRK
HRSRSRSRDKRRHSDRTRRSRSRSRDRRRRRSRSKERRHRSSPIKKAPTPPIVPPEPKER
SPSPADRDARTVFCMQLSQRIRPRDLEEFFSSVGTVRDVKLIADKHSKRSKGIAYVEFKD
MESVPLSLGLSGQKVLGVPIIVQPSQAEKNRVQQTATQSSLQKGNFGPMKLYVGSLHQNI
TEDMLKGIFSPFGKIEQVQLVKDVATNISRGYGFITFTEAECAKRALEQLNGFEIAGKPM
KVSNVTDKADQQAALALASGQTGPSFLDNDAIERTGIDLGTTGRLQLMAKLAEGTGLMVP
SITQQALSMGQAMGLGLRGAINVQSSE
Nucleotide sequence
Length: 1,163
>Harore.CG.MTP2014.S186.g11015.01.t
ATGGCCGACGATCTTGACGTGGAGGCTATGTTAGAAGCTCCGTTCAAGAAGGACCAGGCG
ACCGAAAATGGCGAATCTAAATCAAGAAGTAAAAACGGTAGGGGAAAGAGCAGCAGAGAT
AAAAAACGCAGTAGATCCCGTAAGCGAAGCAGGTCCCGAAAAGAAAGCAAGTCTCGTAAA
CACCGATCTCGTTCAAGAAGCAGAGACAAAAGAAGACATTCCGATCGTACCAGACGTTCT
AGGAGTCGATCGCGTGATAGAAGGCGAAGAAGGAGTCGTTCTAAAGAAAGACGCCATCGT
TCGAGTCCAATAAAAAAAGCACCGACTCCTCCGATTGTGCCGCCAGAGCCAAAGGAACGT
TCGCCCAGCCCTGCAGATCGTGACGCTCGTACCGTGTTTTGTATGCAACTTTCTCAACGC
ATCAGACCACGAGATTTGGAAGAATTTTTTTCTTCTGTAGGCACCGTACGAGATGTCAAA
TTGATCGCCGACAAACATTCAAAAAGATCGAAGGGAATAGCATACGTCGAATTTAAAGAT
ATGGAATCAGTGCCTTTGTCACTTGGCCTGAGCGGACAGAAAGTATTGGGTGTTCCCATA
ATAGTACAGCCGTCGCAAGCTGAAAAGAACAGAGTTCAGCAAACCGCTACTCAAAGCAGC
TTGCAGAAGGGTAATTTCGGACCTATGAAACTGTATGTAGGATCACTGCATCAAAACATC
ACTGAAGACATGCTCAAAGGAATATTTTCCCCGTTTGGTAAAATAGAACAAGTACAGTTG
GTAAAGGACGTCGCAACTAACATTTCCCGTGGTTACGGTTTCATCACGTTTACAGAAGCG
GAATGTGCCAAACGTGCACTGGAACAATTAAACGGATTTGAAATCGCCGGAAAACCTATG
AAGGTGTCAAACGTTACAGATAAGGCTGACCAACAAGCCGCTTTGGCACTGGCCTCTGGT
CAAACAGGGCCCTCATTCCTGGACAATGATGCTATTGAGCGGACAGGAATCGACCTCGGC
ACCACCGGCAGACTTCAATTAATGGCAAAACTTGCCGAAGGCACCGGTTTAATGGTCCCA
TCCATAACCCAACAAGCGCTATCGATGGGTCAGGCCATGGGCTTAGGATTACGTGGTGCC
ATCAATGTACAGAGTAGCGAATT
| TIGRFAM |
RBM39_SF (IPR006509) - T[22-372] 9.3E-112 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[57-221] 5.0E-24 - T[228-319] 6.6E-26 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[64-205] 1.61E-21 - T[225-324] 1.48E-28 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[130-207] 14.419 - T[229-307] 19.672 |
| SMART |
RRM_dom (IPR000504) - T[131-203] 4.2E-14 - T[230-303] 7.8E-27 |
| Pfam |
RRM_dom (IPR000504) - T[132-194] 2.7E-10 - T[231-300] 8.8E-22 |
| Pfam |
RBM39_linker (IPR029123) - T[330-374] 1.3E-9 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HNRDL_HUMAN | 33.951 % | 85.9 | 1.96E-18 |
| RBM39_HUMAN | 54.568 % | 374 | 2.38E-126 |
| RBM23_HUMAN | 50.503 % | 334 | 5.83E-112 |