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TRANSCRIPT CARD

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  1. Transcript 'Boleac.CG.SB_v3.S794...'
  2. Transcript 'Harore.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S186.g06063.01.t

Possible name(s)

NHP2; RPL7A; SNU13

Location

S186 [50,058 / 50,648]

Sequences

Amino acid sequence

Length: 173

>Harore.CG.MTP2014.S186.g06063.01.p
MYNHEVKPLDLCEKICIDLSEAVIHKPLIQLVSQEVYRNKQHSIKMADKEVNSKAFPLAD
PELQTDILNLVQQCSNYKQLKKGANEATKTLNRGLSDLIVLAADAEPLEIILHLPLLCED
KNVGYVFVRSKQALGRACGVSRPVIAASIIANEGSQLRPQIDTLRRSVEKLLV

Nucleotide sequence

Length: 522

>Harore.CG.MTP2014.S186.g06063.01.t
ATGTATAATCACGAAGTAAAACCTCTCGATTTATGTGAAAAAATTTGCATCGACCTCAGT
GAAGCCGTGATCCATAAACCACTTATTCAGTTGGTGAGCCAAGAGGTATATCGAAACAAA
CAACATTCTATAAAAATGGCAGACAAGGAAGTGAACAGCAAGGCTTTCCCGTTAGCAGAC
CCGGAACTTCAAACAGATATTTTGAACTTGGTTCAGCAATGTTCAAATTATAAACAACTG
AAAAAGGGAGCCAATGAAGCGACTAAAACATTGAACAGAGGGTTATCTGATCTGATAGTA
CTCGCTGCAGACGCGGAACCATTAGAAATCATCTTGCATTTACCTTTGCTATGCGAAGAT
AAGAACGTAGGATACGTCTTCGTTCGTTCCAAACAAGCACTTGGACGAGCTTGCGGGGTG
TCGAGGCCCGTCATTGCAGCTTCGATAATCGCGAATGAAGGGTCACAACTAAGACCTCAA
ATAGATACTCTGAGGAGGTCTGTGGAGAAATTGTTGGTTTAA

InterProScan

Gene3D
L30e-like (IPR029064) - T[44-173] 1.2E-46
SUPERFAMILY
L30e-like (IPR029064) - T[51-168] 1.81E-33
PRINTS
H/ACA_rnp_Nhp2_euk (IPR002415) - T[53-66] 5.9E-23 - T[66-81] 5.9E-23 - T[83-93] 5.9E-23 - T[127-139] 5.9E-23
Pfam
Ribosomal_L7Ae/L30e/S12e/Gad45 (IPR004038) - T[67-156] 2.6E-24
PRINTS
Ribosomal_L7Ae/L8/Nhp2 (IPR018492) - T[80-94] 1.2E-19 - T[99-112] 1.2E-19 - T[115-125] 1.2E-19 - T[125-139] 1.2E-19

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
NHP2_HUMAN 36.19 % 79.3 3.08E-19
NH2L1_HUMAN 72.656 % 182 4.48E-60