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TRANSCRIPT CARD

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  1. Transcript 'Harore.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S185.g02677.01.t

Possible name(s)

TRAM1; TRAM1L1; TRAM2

Location

S185 [147,261 / 152,212]

Sequences

Amino acid sequence

Length: 374

>Harore.CG.MTP2014.S185.g02677.01.p
MGMPRKKSKNPPVMSHEFVIQNHADIVSCTAIVVILGLVFETTAKISRLFIFLQYGIKQE
EEKTEDGDIIEKFPVNFERGWLDAFTVVFQAMIIIVVHAVIQEYLIDKVSKKLHLSKTKT
SKFNESGQLAIWSVVSACWAAYRVHRNGLIPDISKIWEEYPHNSLYWEDKLFLTVQLAYW
LHMFPEIYLQKIRKEEIRHRIQYYSLYFGFILCAYFLHFWRFATVVLAFHYSVECIFHLA
RMFYFAEKTEQAQIGFNSWRVLFPLIRFIILSLTIVVFVFGLGKIDQQGFDPASGNYNTS
LIRNLSMGVMCMLQLWLMWLYIQLQFKHKRNQQQVQQKKKNVGAKPKNAKKNQKKQADAE
VDDNSVSNGKLKRS

Nucleotide sequence

Length: 2,936

>Harore.CG.MTP2014.S185.g02677.01.t
AGCTTGACGTGATCTTAGTGTAGATTAATTTATCAAAATGGGGATGCCAAGAAAAAAGAG
CAAGAACCCACCAGTGATGAGCCATGAGTTTGTGATCCAAAATCATGCAGACATCGTTTC
ATGCACGGCAATTGTTGTTATTCTTGGTCTGGTATTCGAGACCACAGCAAAGATCAGCAG
GCTGTTCATCTTCCTTCAATATGGCATTAAACAGGAAGAAGAGAAAACGGAGGATGGAGA
TATTATTGAAAAGTTTCCTGTCAATTTCGAAAGGGGATGGCTAGACGCATTTACTGTAGT
GTTTCAAGCAATGATCATCATAGTCGTCCATGCTGTCATCCAAGAATACCTTATTGATAA
AGTGTCAAAAAAACTGCACCTGTCAAAGACTAAGACCAGCAAGTTCAACGAATCTGGTCA
GCTAGCCATTTGGTCAGTTGTGTCTGCTTGCTGGGCTGCATACCGTGTACATCGGAATGG
ATTGATACCGGATATATCTAAGATCTGGGAAGAATATCCACACAATAGCCTCTACTGGGA
AGACAAACTCTTTCTGACTGTTCAGCTTGCTTACTGGCTACACATGTTCCCTGAAATATA
TCTCCAGAAGATAAGAAAAGAAGAAATACGACACAGGATTCAATATTACAGCCTTTACTT
TGGATTCATCCTTTGCGCTTACTTCTTGCACTTCTGGAGGTTTGCCACTGTGGTTCTTGC
CTTCCACTACTCGGTCGAATGCATTTTCCATTTGGCAAGGATGTTTTACTTCGCAGAGAA
AACAGAACAAGCGCAGATTGGATTCAACTCATGGAGAGTTTTGTTCCCGTTGATCCGTTT
CATCATTCTCTCGCTGACTATTGTAGTCTTTGTGTTTGGATTAGGCAAGATTGACCAACA
AGGGTTTGATCCTGCTTCTGGCAATTATAACACTAGTCTAATAAGAAACCTGTCCATGGG
TGTTATGTGTATGTTGCAACTCTGGCTTATGTGGCTCTACATTCAGCTCCAATTCAAACA
CAAAAGGAATCAACAGCAAGTTCAGCAGAAAAAGAAAAACGTCGGGGCAAAACCAAAGAA
TGCAAAGAAAAACCAAAAGAAGCAAGCCGATGCCGAGGTGGATGACAACAGTGTCAGCAA
TGGCAAACTGAAGCGAAGCTAAACTTGTTCAATCCTCTTGTCTCCAAATGGTTGTAAGTA
TACCTTTGTGCAACCATTACTCGTTATTGCGATTTGTAAAATCTTCGAAACCGTTGAAAT
AATAGCTTGTCAATTTTTCTTTGAATCTATGCTTGGTCGAAAATTGTGTCGGTGATATAT
TTATTCCAATTATTAAAATGATTAATTATTTCACGTACGTGCAGTCCTTGCTCTACGTAT
TTCCACATTACTTTGTCATTTACAAACTCCCCATCCTGTTGGAAAAATTTCCTTGGTTTC
TACCCAGTGCTCAAGTGGGGCTCGATGCAGTTGCTCGTAAATTCCTGCCACTGCCGTTAA
TACCCGAAAGCATCTCAAAATGATGCAACTAATAAAATGTTATAACATAATATATACTTA
TGTTAAAGTTATATTAAATTTAACATTTTAAAGCAATATAGTGCATTTGCAAATGTCTTT
CGATTTATCGCAATGTTCTACCTATCGTAGACCCAAGTATGAAAGATTTACTGCATCGTG
GTGTTTTCTTGGCTGGATAGGATTTATAGGAGCCTCCCAGCATTGAATTCCCCACTTTGA
GCGCTGTTGGTAGTTGAATACTTAATTGATTTACAGCTGTAAGTCGCTGTTGACTGAGGA
TTGTTATTGTTGCAAATTAAATAATGCCTTGTACTACGAGGAAAACGTTTTCATCAGGCT
CTTGTCAGCTGAAAATCTCCTCGAATGAGCCTATTGTGAAATGTAAATGGCCTATTCAAT
TCCGAGGGAGTTTATTGCTGTGAGGCAATCTTGTTTAGATATGATCTATTAACCATGAAT
TGTGGAAGGGGTTTGGTCACTCACGTTTTCCTAACAGTACATTGTACATAGCTTGTGAAT
CCGATGGGTATTTGGCTAGGAAGTTGCCTTTTAACATAATTCCAAGATCTGTTCTGGAAT
TATGCACTTATGCAAAGTTAATAGTCATAAATTTGAAGTGTAGTTTTGTATACGTGTCAA
GTTTTCAGTTACAGTTTTATATTTCTGAGGTGTGTGTATATGTAGATCAAGTTTTTCTGA
TAATGGTTTGTTGATCGTAAAAATATAAGTATGACGTGTAGGCTAAGAATGAAAAATGTA
CCTTCTCGTTAGCAAGAGATATTACATTTATTATTCCTTGTTAGCATTTTAGCAATAAAC
AGTAAGAGGAGAATGCTTATCCAGAATACTTTGGACTCTTATAGAGAGGACTGCAGCTCC
ATGATCTTTTTTTTTTGCATCAAGAGGAGTTTTTCTTTTGTATCTTATTTTGATTTCAAC
CCTGTCACTTTTTATGATTTCGAAGAGTTTTCTCATAGTAAATCTGCTCGTTATAGATAT
CACCATTCTTCCGCTTTGTATTCTTGAAGAGAGTTCAAACTCAATATGAAAATACAGTGG
AAGCCACGTATAATGTTAATGTTATCAATTGGGTATTGTTGTCCAAATTAATCTGAAATA
CTGAACATTATCAGCCAGTTATTGGTACAGAAAAAAGACTGTCCCACAGTGATTACAATA
GGCGGCTACCCCTGTATGATTCTATGTGTATTGTGATTTGTGAAAAAGGGAAACTACTCG
AAATGAACCATTAATATTTTGCTAGTACCATTTAAATTTTTACTGATTTAGGTGTGCTGT
TTGTTGACTAATATGGGAACTTCGTTTTACTGGTGTTTACATCTCTTTATTACTGTATAT
CGTTTATTGACTTGCACGAACAGAAGTTGAAACAACGGAATATTGTGAATCTAGAA

InterProScan

PIRSF
Translocation_assoc_membrane (IPR016447) - T[1-374] 4.8E-138
Pfam
TRAM1 (IPR013599) - T[49-119] 1.7E-12
SMART
TLC-dom (IPR006634) - T[121-332] 1.3E-17
Pfam
TLC-dom (IPR006634) - T[122-322] 5.5E-17

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
TRAM1_HUMAN 39.578 % 280 3.42E-92
TRAM2_HUMAN 40.751 % 285 5.2E-94
TR1L1_HUMAN 35.474 % 208 3.97E-64